benchmarks/imb 2021.11_2

benchmarks/imb: Fix P_Write_Shared segfault

With CHECK_RESULTS enabled, IMB-IO-openmpi P_Write_Shared crashes on
the first non-zero message size because IMB_chk_distr() uses reccnt,
while IMB_init_pointers() leaves it NULL for MPIIO builds.

Allocate the arrays needed for MPIIO builds.

PR:		296182
Reviewed by:	thierry (mentor)
Approved by:	thierry (mentor)

benchmarks/imb: not for 32 bit architectures

The code bases uses %lu or PRIu64 to print size_t values in various
places.  Elsewhere it assumes size_t is 64 bits, such as when
evaluating ((size_t)1) << IMB_P2P_MAX_MSG_LOG where
IMB_P2P_MAX_MSG_LOG is greater than 31.

Approved by:	portmgr (build fix blanket)
MFH:		2026Q2

benchmarks/imb: Update to 2021.11

- Switch to GitHub distfile fetching
  - Convert MPICH/OpenMPI options to flavors
  - Pass OpenMP flags needed for build
  - Cleaned up blocks for portclippy
  - Take maintainership

PR:		296069
Reviewed by:	thierry (mentor)
Approved by:	thierry (mentor)

*/*: bump PORTREVISION after the upgrade of MPICH

*/*: bump PORTREVISION after the upgrade of MPICH to 4.1.2

benchmarks/imb: upgrade to v2021.7

Releases notes at <https://github.com/intel/mpi-benchmarks/releases>.

benchmarks/imb: Fix build with llvm16

Approved by:	portmgr (blanket)
Sponsored by:	The FreeBSD Foundation

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

benchmarks/imb: upgrade to 2021.3

This port was very outdated: releases notes are available at
<https://github.com/intel/mpi-benchmarks/releases>.

The PDF is no more included but the user guide is available at
<https://software.intel.com/en-us/imb-user-guide>.

Also modernize the port and switch from OpenMPI 3 to OpenMPI4 (optiopnal,
MPICH still being the default).

benchmarks: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Alexander Logvinov <ports@logvinov.com>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Alexey V. Degtyarev
  *  Andreas Kohn <andreas@syndrom23.de>
  *  Andrew Shevtsov <nyxo@dnuc.polyn.kiae.su>
  *  Andrey Zakhvatov <andy@FreeBSD.org>
  *  Andy Clark <andrewclarkii@gmail.com>
  *  Antonio Carlos Venancio Junior (<antonio@inf.ufsc.br>)
  *  Bill Fumerola <billf@chc-chimes.com>
  *  Brad Davis <brd@FreeBSD.org>
  *  Bruce A. Mah <bmah@FreeBSD.org>
  *  Chao Shin <quakelee@cn.freebsd.org>
  *  Danilo Egea Gondolfo <danilo@FreeBSD.org>
  *  David O'Brien (obrien@FreeBSD.org)
  *  David O'Brien (obrien@NUXI.com)
  *  Dima Sivachenko <dima@chg.ru>
  *  Gabriel M. Dutra <0xdutra@gmail.com>
  *  Gea-Suan Lin <gslin@ccca.nctu.edu.tw>
  *  Gea-Suan Lin <gslin@gslin.org>
  *  Hannes Hauswedell <h2+fbsdports@fsfe.org>
  *  Johannes Dieterich <dieterich@ogolem.org>
  *  Johannes Dieterich <jmd@FreeBSD.org>
  *  Joseph Koshy <jkoshy@FreeBSD.org>
  *  Kris Moore <kmoore@FreeBSD.org>
  *  Lars Eggert <lars@eggert.org>
  *  Mark Pulford <mark@kyne.com.au>
  *  Matthias Fechner <mfechner@FreeBSD.org>
  *  NAKAJI Hiroyuki <nakaji@jp.freebsd.org>
  *  NAKATA Maho <maho@FreeBSD.org>
  *  Oliver Lehmann <oliver@FreeBSD.org>
  *  Pete Fritchman <petef@databits.net>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Radim Kolar
  *  Radim Kolar <hsn@sendmail.cz>
  *  Roman Bogorodskiy <bogorodskiy@inbox.ru>
  *  Scott Flatman <sf@dsinw.com>
  *  Sergey A. Osokin <osa@FreeBSD.org>
  *  Sergey Kandaurov <pluknet@gmail.com>
  *  Sergey Skvortsov <skv@protey.ru>
  *  Slava Shwartsman <slavash@FreeBSD.org>
  *  Stephen Montgomery-Smith <stephen@math.missouri.edu>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Thomas Dreibholz <dreibh@iem.uni-due.de>
  *  Tom Judge <tom@tomjudge.com>
  *  Veniamin Gvozdikov <vg@FreeBSD.org>
  *  Vsevolod Stakhov <vsevolod@FreeBSD.org>
  *  Will Andrews <andrews@technologist.com>
  *  Yen-Ming Lee <leeym@FreeBSD.org>
  *  Ying-Chieh Liao <ijliao@FreeBSD.org>
  *  arved
  *  asami
  *  dikshie <dikshie@lapi.itb.ac.id>
  *  gnn
  *  ijliao
  *  janos.mohacsi@bsd.hu
  *  jesper@jdn.dk
  *  jmz
  *  koshy
  *  luigi@FreeBSD.org
  *  mharo@FreeBSD.org
  *  mich@freebsdcluster.org
  *  mr
  *  se
  *  shalunov
  *  thierry@pompo.net
  *  trasz <trasz@pin.if.uz.zgora.pl>
  *  uminac

With hat:	portmgr

Remove # $FreeBSD$ from Makefiles.

- Move OpenMPI support to net/openmpi3. OpenMPI 1 is deprecated.

Bump PORTREVISION for ports depending on the canonical version of GCC as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Bump PORTREVISION for ports depending on the canonical version of GCC defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Change 4 ports from net/mpich2 to net/mpich

mpich2 is the obsolete version 2.x, mpich is at the current version 3.x

Ports:
biology/phyml benchmarks/mdtest benchmarks/imb math/parmetis

Bump PORTREVISIONs of all users of math/mpc that we just updated to version 1.1.0 (via revision 464079).

Remove dead links from MASTER_SITES or WWW

Cleanup patches, category benchmarks

Rename them to follow the make makepatch naming, and regenerate them.

With hat:	portmgr
Sponsored by:	Absolight

- Remove redundant ALL_TARGET - Switch to options helpers

Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.

With hat:	portmgr
Sponsored by:	Absolight

Convert ports to use the options helpers in categories [abc]*, and minor fixes.

Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3412?

MASTER_SITES cleanup.

- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
  of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
  no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.

While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.

Also, replace some EXTRACT_SUFX occurences with USES=tar:*.

Checked by:	make fetch-urlall-list
With hat:	portmgr
Sponsored by:	Absolight

- Update net/openmpi to 1.8.4

Cleanup plist

- Update net/openmpi from 1.8.2 to 1.8.3

Update the default version of GCC in the Ports Collection from GCC 4.7.4 to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

- Upgrade to 1.5;

- Bump PORTREVISION for consumers.

Chase the upgrade of net/mpich2.

Approved by:	portmgr (non staged ports)

- Convert net/openmpi to USES=libtool and bump dependent ports - Add INSTALL_TARGET=install-strip - Use BROKEN_sparc64

Approved by:	portmgr (implicit, bump unstaged port)

- Convert to new options framework - Support staging

Update the default version of GCC used in the Ports Collection from GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

benchmarks/imb: Mark jobs unsafe

Convert benchmarks to PORT_OPTIONS:MDOCS

Convert to USES=dos2unix While here stagify some of the ports Modernize LIB_DEPENDS Extract zip with bsdtar when possible

Allow the port to go a bit further in the build process.

Instead of complaining that `gmake' does not exist, the port fails a bit
later and at least starts building.

The previous failure was caused because we used USES=gmake but then re-set
BUILD_DEPENDS and MAKE_ENV a few lines below in the Makefile.

Update to libmpc version 1.0.1 which brings the following fixes:

- Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)

Add NO_STAGE all over the place in preparation for the staging support (cat: benchmarks)

Convert benchmarks from USE_GMAKE to USES=gmake While here: - Trim headers - convert some port to the new perl5 world

Chase the upgrade of MPICH2.

Since I'm there, pet portlint where needed, e.g. by removing oblsolete
MD5 checksums.

PR:		ports/154715

Drop maintainership for ports I can't maintain anymore.

- Chase relocation of net/mpich2

- Bump PORTREVISION if needed

- Fix some portlint errors.

Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)

- Use proper capitalization in my email address.

Approved by:	miwi (mentor)
Suggested by:	sat

- Welcome X.org 7.2 \o/. - Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}. - Bump PORTREVISION for ports intalling files in ${X11BASE}.

- Remove workarounds for FreeBSD 4.

PR:		ports/111722
Submitted by:	edwin
Approved by:	miwi (mentor)

Change my email address to trasz@FreeBSD.org.

Approved by:	miwi (mentor)

- Marked broken for 4.X

PR:             ports/107508
Submitted by:   trasz (maintainer)

- Fix build problem

Submitted by: pointyhat via kris

The idea of IMB is to provide a concise set of elementary MPI benchmark kernels. With one executable, all of the supported benchmarks, or a subset specified by the command line, can be run. The rules, such as time measurement (including a repetitive call of the kernels for better clock synchronization), message lengths, selection of communicators to run a particular benchmark (inside the group of 

WWW: http://www.intel.com/cd/software/products/asmo-na/eng/cluster/mpi/219848.htm

PR:		ports/105665
Submitted by:	trasz <trasz at pin.if.uz.zgora.pl>