Release a few more ports to ports@ Narrowing my focus more toward upstream development10768ab4fb
Port details
biology/chip-seq 0.3.1
Metaport for ChIP-Seq analysis
Port info
- Maintainer
- ports@FreeBSD.org
- Packages
- latest: 0.3.1
- Upstream
- Higher version available: 1.5.5
- Last update
- to 0.3.1 · 10768ab4fb
- Quarterly
- not in the 2026Q4 packages
- WWW
- https://github.com/auerlab/
- Links
- cgit · VuXML · Report wrong data
Install
- Package
# pkg install chip-seqinstalls 0.3.1 fromlatest- Port
# cd /usr/ports/biology/chip-seq && make install clean- Size
- 1.6 KiB download · 243 B installed
- License
- NA
- pkg-message
Shown always
===> NOTICE: The chip-seq port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing
Packages by version and architecture
latest
| FreeBSD version | amd64 | aarch64 | i386 |
|---|---|---|---|
| FreeBSD 16 | 0.3.1 | ✗ | – |
| FreeBSD 15 | ✗ | ✗ | – |
| FreeBSD 14 | ✗ | ✗ | ✗ |
quarterly (2026Q4)
| FreeBSD version | amd64 | aarch64 | i386 |
|---|---|---|---|
| FreeBSD 15 | ✗ | ✗ | – |
| FreeBSD 14 | ✗ | ✗ | ✗ |
version as in the ports tree (latest) or the most common one (quarterly) · different version · ✗ not built · – no packages for this platform. Package sets that have not been rebuilt for 60 days are left out.
Dependencies
Depends on 15
- lang/python312 3.12.15 12 unaddressed
- biology/biolibc-tools 0.1.5
- biology/bowtie2 2.5.5
- biology/bwa 0.7.19
- biology/fasda 0.2.0.1
- biology/fasda-utils 0.1.0.2_1
- biology/fastq-trim 0.1.4
- biology/fastqc 0.12.1_2
- biology/peak-classifier 0.1.4.13_2
- biology/py-macs3 3.0.5
- biology/py-multiqc 1.35
- biology/samtools 1.24
- biology/sra-tools 3.4.1_3
- ftp/curl 8.23.0
- www/webbrowser 0.4.0
Run and library dependencies of the package on latest. Build dependencies are not in the package index.
Required by 0
No package on latest depends on it.
Packages on latest that depend on it directly.
Unaddressed and VuXML only (0)
No unaddressed CVE and nothing reported by
pkg audit for the packaged version 0.3.1.Fixed (0)
No VuXML entries for this package.
Problem reports (0) · open in Bugzilla, most recently changed first
None.
Commits (4)
biology/chip-seq: Update to 0.3.1 Drop py-macs2: Incompatible with python 3.12 and unmaintained Install py-macs2 unconditionally4503d4fceb
all: bump PORTREVISION after updating graphics/libyuv Using the Tools/scripts/bump_revision.pl scriptb304d8ab18
biology/chip-seq: Metaport for ChIP-Seq analysis Metaport to install tools for typical ChIP-Seq analysis, including QC, adapter trimming, alignment, and differential analysis. Presently identical to biology/atac-seq, but may diverge in the future.fddb1ea643