biology/libbigwig0.4.8

biology/libbigwig: update 0.4.7 → 0.4.8

biology/libbigwig: Fix name-clashing in roundup

Rename the roundup method defined in bwValues.c as it clashes with the
roundup macro defined in sys/param.h

/wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c:9:35:
error: too few arguments provided to function-like macro invocation
static uint32_t roundup(uint32_t v) {
                                  ^
/usr/include/sys/param.h:300:9: note: macro 'roundup' defined here
        ^
/wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c:9:24:
error: expected ';' after top level declarator
static uint32_t roundup(uint32_t v) {
                       ^
                       ;
/wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c:350:30:
error: too few arguments provided to function-like macro invocation
        o->m = roundup(o->l+1);
                             ^
/usr/include/sys/param.h:300:9: note: macro 'roundup' defined here
        ^
/wrkdirs/usr/ports/biology/libbigwig/work/libBigWig-0.4.7/bwValues.c:370:30:
error: too few arguments provided to function-like macro invocation
        o->m = roundup(o->l+1);
                             ^
/usr/include/sys/param.h:300:9: note: macro 'roundup' defined here
        ^
4 errors generated.

Approved by:	portmgr (blanket)

biology/libbigwig: Update 0.4.6 → 0.4.7

Reported by:	portscout

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

One more small cleanup, forgotten yesterday. Reported by:	lwhsu

Remove # $FreeBSD$ from Makefiles.

biology/libbigwig: Update 0.4.4 -> 0.4.6

New port: biology/libbigwig: C library for handling bigWig files (containing genomic data)