Release numerous ports to ports@ I've been retired for a few years, and it is unlikely I will be doing any more scientific computing support in the future. I have continued to maintain ~160 ports to the best of my ability, mainly as a favor to the community, but I can no longer justify the time and effort required. I am therefore releasing most of my scientific ports, along with a few others, to ports@. I will continue to maintain ports I am actively using and those for which I am upstream.2414383046
Port details
biology/mca-calling0.1.0
Core tools for Mosaic Chromosomal Alteration event calling
- Maintainer
- ports@FreeBSD.org
- Packages
- mca-calling 0.1.0
- Upstream
- up to date
- CPE
- none, CVEs only via VuXML
- WWW
- https://github.com/auerlab/
- Links
- cgit · VuXML
Unaddressed (0) · The CVE record lists this version as affected, no VuXML entry names the CVE
None. There is no CVE without a VuXML entry for this version.
VuXML only (0) · listed, port not fixed yet
None.
pkg audit reports nothing for this version.Fixed (0)
No VuXML entries for this package.
Commits (2)
biology/mca-calling: Core tools for mCA event calling The mca-calling meta-port provides the core tools needed for performing a typical mCA (Mosaic Chromosomal Alteration) analysis, including conversion of SRA VCF files to a format suitable for haplohseq and MoCha, and haplohseq and MoCha event calling. The GWAS analysis that follows is typically done with R-based tools installed within R.a11fc4771c