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Port details

biology/preseq3.2.0

Predict yield of distinct reads from a genomic library

Maintainer
ports@FreeBSD.org
Packages
preseq 3.2.0
Upstream
up to date
CPE
none, CVEs only via VuXML
WWW
https://github.com/smithlabcode/preseq
Links
cgit · VuXML

Unaddressed (0) · The CVE record lists this version as affected, no VuXML entry names the CVE

None. There is no CVE without a VuXML entry for this version.

VuXML only (0) · listed, port not fixed yet

None. pkg audit reports nothing for this version.

Fixed (0)

No VuXML entries for this package.

Commits (4)

Jason W. Bacon (jwb) · 3.2.0
Release numerous ports to ports@

I've been retired for a few years, and it is unlikely I will be doing
any more scientific computing support in the future.  I have continued
to maintain ~160 ports to the best of my ability, mainly as a favor to
the community, but I can no longer justify the time and effort
required.  I am therefore releasing most of my scientific ports, along
with a few others, to ports@.  I will continue to maintain ports I am
actively using and those for which I am upstream.
2414383046
Rene Ladan (rene) · 3.2.0
all: drop support for FreeBSD 13, mips and risc64sf

Reviewed by:            many (*)
Differential Revision:  https://reviews.freebsd.org/D55624
Differential Revision:  https://reviews.freebsd.org/D55642 (merged in from bofh)

many (*)
  acm arrowd brooks cmt dch decke dinoex eduardo fluffy fuz gahr garga
  jbeich joerg jrm kai kenrap martymac matthew mfechner michaelo mizhka
  nobutaka pkubaj se tagattie thj

  Anton Saietskii
  GenericRikka
  Gert Doering
  Jan Bramkamp
  Oleh Hushchenkov
  Oleksandr Kryvulia
  Ralf van der Enden
  Yamagi

  desktop kde python tcltk office
2a7c056120
Jason W. Bacon (jwb) · 3.2.0
preseq: Not for 32-bit platforms

Build fails on i386 and bioinformatics generally requires 64 bits
1c58b37834
Jason W. Bacon (jwb) · 3.2.0
biology/preseq: Predict yield of distinct reads from a genomic library

The preseq package is aimed at predicting the yield of distinct reads
from a genomic library from an initial sequencing experiment. The
estimates can then be used to examine the utility of further
sequencing, optimize the sequencing depth, or to screen multiple
libraries to avoid low complexity samples.
af7a74db00