CVE and update status of the FreeBSD ports tree3,456 unaddressed CVEs in 716 portsAll times are CET
Port details

biology/rna-seq 0.2.0

Metaport for RNA-Seq analysis

0
unaddressed
0
VuXML only
0
fixed
0
open problem reports

Port info

Maintainer
ports@FreeBSD.org
Packages
latest: 0.2.0
Upstream
Higher version available: 1.3.0
Last update
to 0.2.0 · 2414383046
Quarterly
not in the 2026Q4 packages
WWW
https://github.com/auerlab/
Links
cgit · VuXML · Report wrong data

Install

Package
# pkg install rna-seq
installs 0.2.0 from latest
Port
# cd /usr/ports/biology/rna-seq && make install clean
Size
1.6 KiB download · 243 B installed
License
NA
pkg-message
Shown always
===>   NOTICE:

The rna-seq port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Packages by version and architecture

latest

FreeBSD versionamd64aarch64i386
FreeBSD 160.2.0✗–
FreeBSD 15✗✗–
FreeBSD 14✗✗✗

quarterly (2026Q4)

FreeBSD versionamd64aarch64i386
FreeBSD 15✗✗–
FreeBSD 14✗✗✗

version as in the ports tree (latest) or the most common one (quarterly) · different version · ✗ not built · – no packages for this platform. Package sets that have not been rebuilt for 60 days are left out.

Dependencies

Depends on 15

Run and library dependencies of the package on latest. Build dependencies are not in the package index.

Required by 0

No package on latest depends on it.

Packages on latest that depend on it directly.

Unaddressed and VuXML only (0)

No unaddressed CVE and nothing reported by pkg audit for the packaged version 0.2.0.

Fixed (0)

No VuXML entries for this package.

Problem reports (0) · open in Bugzilla, most recently changed first

None.

Commits (9)

Jason W. Bacon (jwb) · 0.2.0
Release numerous ports to ports@

I've been retired for a few years, and it is unlikely I will be doing
any more scientific computing support in the future.  I have continued
to maintain ~160 ports to the best of my ability, mainly as a favor to
the community, but I can no longer justify the time and effort
required.  I am therefore releasing most of my scientific ports, along
with a few others, to ports@.  I will continue to maintain ports I am
actively using and those for which I am upstream.
2414383046
Jason W. Bacon (jwb) · 0.2.0
biology/rna-seq: Update to 0.2.0

Add biology/fasda-utils to metaport depends
c05bc1293c
Rene Ladan (rene) · 0.1.4_1
all: bump PORTREVISION after updating graphics/libyuv

Using the Tools/scripts/bump_revision.pl script
b304d8ab18
Jason W. Bacon (jwb) · 0.1.4
biology/rna-seq: Add biology/star dep to metaport
3a654ece10
Jason W. Bacon (jwb) · 0.1.3
biology/rna-seq: Add curl to metaport deps

Standardizing on a download tool simplifies pipelines
74b4fa60b3
Gerald Pfeifer (gerald) · 0.1.2_1
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
8d3e020ed0
Jason W. Bacon (jwb) · 0.1.2
biology/rna-seq: Drop biology/igv dep

Non-essential and currently broken
d91c1fae70
Jason W. Bacon (jwb) · 0.1.1
biology/rna-seq: Update to 0.1.1

Fix WWW
Add www/webbrowser for portable FastQC report viewing
606c5fdfde
Jason W. Bacon (jwb) · 0.1.0
biology/rna-seq: Metaport for RNA-Seq analysis

Metaport to install tools for typical RNA-Seq analysis, including QC,
adapter trimming, alignment, and differential analysis.
8e926be18e