devel/py-anndata: Update to 0.13.4 Changes: https://github.com/scverse/anndata/releases7d190bca2d
Port details
devel/py-anndata 0.13.4
Annotated data
- Maintainer
- sunpoet@FreeBSD.org
- Packages
- latest: 0.13.4
- Upstream
- up to date
- Last update
- to 0.13.4 · 7d190bca2d
- Quarterly
- 2026Q4: 0.13.4
- WWW
- https://anndata.readthedocs.io/en/stable/
- Links
- cgit · VuXML
Unaddressed and VuXML only (0)
No unaddressed CVE and nothing reported by
pkg audit for the packaged version 0.13.4.Fixed (0)
No VuXML entries for this package.
Problem reports (1) · open in Bugzilla, most recently changed first
| PR | Summary | Status | Changed |
|---|---|---|---|
| 299768 | maintainer-feedback? devel/py-anndata: Add missing dependencies (import fails without pydantic-settings) | New | 2026-10-23 |
Commits (41)
devel/py-anndata: Update to 0.13.2 - Update version requirement of RUN_DEPENDS Changes: https://github.com/scverse/anndata/releases20c0c419cc
devel/py-anndata: Update to 0.12.19 Changes: https://github.com/scverse/anndata/releases9574772d59
devel/py-anndata: Update to 0.12.18 Changes: https://github.com/scverse/anndata/releases7b9ff3a514
devel/py-anndata: Update to 0.12.16 Changes: https://github.com/scverse/anndata/releases55dcfa8d53
devel/py-anndata: Update to 0.12.14 Changes: https://github.com/scverse/anndata/releasesa2c09bd575
devel/py-anndata: Update to 0.12.13 Changes: https://github.com/scverse/anndata/releases2c502d48ad
devel/py-anndata: Update to 0.12.12 Changes: https://github.com/scverse/anndata/releases88f74d0bc0
*/py-*: Update version requirement of *_DEPENDS01291f5d60
*/*: bump PORTREVISION after switching to NumPy 2.x2bf3834a19
*/*: Switch to NumPy 2.x PR: 294328 Exp-run: antoineb0b4d9e1ea
devel/py-anndata: Update to 0.12.11 - Update WWW Changes: https://github.com/scverse/anndata/releasesb8e01f6777
devel/py-anndata: Update version requirement of RUN_DEPENDS - Bump PORTREVISION for package change7ee49524ca
math/py-numpy: switch all consumers to math/py-numpy1 ...and bump PORTREVISIONs of consumers with hard RUN_DEPENDS PR: 281470d4bd5ba72e
devel/py-anndata: Update to 0.12.10 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/8bd34c8c71
devel/py-anndata: Update to 0.12.9 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/2418ca468a
devel/py-anndata: Update to 0.12.7 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/237d030e15
devel/py-anndata: Update to 0.12.6 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/b64d2c9db6
devel/py-anndata: Update to 0.12.4 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/b96c6a28d6
devel/py-anndata: Update to 0.12.3 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/8bb76a08a0
devel/py-anndata: Update to 0.12.1 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.htmla53b9386dd
devel/py-anndata: Update to 0.12.0 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.html3c7634ad58
devel/py-anndata: Update to 0.11.4 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.htmle0b73b2280
devel/py-anndata: Update to 0.11.3 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.htmlbd273de98b
devel/py-anndata: Update to 0.11.1 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.html4865503a9f
devel/py-anndata: Update to 0.10.9 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.htmlc4fb5f234d
devel/py-anndata: Update to 0.10.8 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.html07b5a3b2bb
devel/py-anndata: Update to 0.10.7 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.htmlae2581479f
Mk/Uses/python.mk: Introduce PY_EXCEPTIONGROUP The minimal version is set to 1.1.1 because it is required by devel/py-cattrs. Convert ports to use PY_EXCEPTIONGROUP to simplify Makefile. With hat: python0a4260b3a1
devel/py-anndata: Update to 0.10.6 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.html2b135c2d30
devel/py-anndata: Update to 0.10.5.post1 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.html7fe3352f15
devel/py-anndata: Update to 0.10.3 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.htmlef6c91eff5
devel/py-anndata: Update to 0.10.2 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.html177178f817
devel/py-anndata: Update to 0.10.1 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.html816a870559
devel/py-anndata: Update to 0.10.0 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.htmlb73df4d1fd
devel/py-anndata: Update to 0.9.2 Changes: https://github.com/scverse/anndata/tree/main/docs/release-notes https://anndata.readthedocs.io/en/latest/release-notes/index.html7ae1f4cb23
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++ -DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable -Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi -Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings -Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x -MT _quickfix_la-QuickfixPython.lo -MD -MP -MF .deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o .libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean '-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568>3d9a815d9cdevel/py-anndata: Revert 71405986885d014b2a00340546570dbd930dd4f1 - Bump PORTREVISION for dependency change The missing tzdata comes from pandas, not anndata itself. PR: 271110 Reference: https://github.com/pandas-dev/pandas/blob/v2.0.1/pyproject.toml#L31c63ced8a89
devel/py-anndata: Fix build with py-pandas-2.0 Approved by: portmgr@(blanket)7140598688
*: Bump PORTREVISIONs for math/mpc update to 1.3.18d3e020ed0
devel/py-anndata: Add py-anndata 0.9.1 anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.9e18517910