math/gsl: Update to 2.8 Changes: https://cgit.git.savannah.gnu.org/cgit/gsl.git/tree/NEWS PR: 292499 Exp-run by: antoine0b5befc569
Port details
math/gsl2.8
The GNU Scientific Library - mathematical libs
- Maintainer
- kde@FreeBSD.org
- Packages
- gsl 2.8
- Upstream
- up to date
- CPE
gnu:gnu_scientific_library- WWW
- https://www.gnu.org/software/gsl
- Links
- cgit · VuXML
Unaddressed (1) · The CVE record lists this version as affected, no VuXML entry names the CVE
| CVE-2024-50610 | 3.6 | 2024-10-27 | GSL (GNU Scientific Library) through 2.8 has an integer signedness error in gsl_siman_solve_many in siman/siman.c. When params.n_tries is negative, incorrect memory allo… |
VuXML only (0) · listed, port not fixed yet
None.
pkg audit reports nothing for this version.Fixed (0)
No VuXML entries for this package.
Commits (94)
math/gsl: Clean up Makefile and sort plist03cc0f52fc
math/gsl: assign to kde@ GSL is required for some KDE ports102845cc32
all: return ports of tcberner to the pool after safekeeping his commit bit Hat: portmgrea6c480767
math/{gsl,octave-forge-fpl}: remove sparc64-related files1744aa5fd4math/gsl: Impelled to share/man Approved by: portmgr (blanket)6f7a6bdf68
Remove WWW entries moved into port Makefiles Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)fb16dfecae
Add WWW entries to port Makefiles It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)b7f05445c0
math: remove 'Created by' lines A big Thank You to the original contributors of these ports: * Aaron Dalton <aaron@FreeBSD.org> * Aaron Dalton <aaron@daltons.ca> * Alessando Sagratini <ale_sagra@hotmail.com> * Alex Dupre <ale@FreeBSD.org> * Alexey Dokuchaev <danfe@FreeBSD.org> * Amarendra Godbole <amarendra.godbole@gmail.com> * Anders Nordby <anders@FreeBSD.org> * Andreas Fehlner (fehlner@gmx.de) * Andrew L. Neporada <andrew@chg.ru> * Andrey <gugu@zoo.rambler.ru> * Andrey Zakhvatov * Anton Berezin <tobez@FreeBSD.org> * Anton Berezin <tobez@plab.ku.dk> * Anton Berezin <tobez@tobez.org> * Anton Shterenlikht * Anton Shterenlikht <mexas@bris.ac.uk> * Bob Eager <bob@eager.cx> * Charlie Kester <corky1951@comcast.net> * Cheng-Lung Sung <clsung@FreeBSD.org> * Cheng-Lung Sung <clsung@dragon2.net> * Chris D. Faulhaber <jedgar@fxp.org> * Christopher J. Ruwe * Christopher Key <cjk32@cam.ac.uk> * Chuck Hein <geekdude@pacbell.net> * Cyrille Szymanski <cnszym@gmail.com> * Dan Rue <drue@therub.org> * Danilo Egea Gondolfo <danilo@FreeBSD.org> * David Naylor <dbn@FreeBSD.org> * David Naylor <naylor.b.david@gmail.com> * Dereckson <dereckson@gmail.com> * Devin Teske <dteske@FreeBSD.org> * Dmitry Sivachenko <demon@FreeBSD.org> * Dmitry Sivachenko <mitya@yandex-team.ru> * Don Croyle <croyle@gelemna.org> * Douglas K. Rand (rand@meridian-enviro.com) * Dylan Simon <dylan@dylex.net> * Edwin Groothuis <edwin@mavetju.org> * Eijiro Shibusawa <ej-sib@ice.uec.ac.jp> * Emanuel Haupt <ehaupt@FreeBSD.org> * Eoin Lawless (eoin@maths.tcd.ie) * Eric A. Griff <eagriff@global2000.net> * Eric van Gyzen <vangyzen@stat.duke.edu> * Ewgenij Gawrilow <gawrilow@math.tu-berlin.de> * Fernan Aguero <fernan@iib.unsam.edu.ar> * Foxfair Hu <foxfair@FreeBSD.org> * Frederic Han <han@math.jussieu.fr> * Gabor Kovesdan <gabor@FreeBSD.org> * Gea-Suan Lin <gslin@gslin.org> * George Reid <greid@ukug.uk.freebsd.org> * Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com> * Greg Larkin <glarkin@FreeBSD.org> * Guangyuan Yang <ygy@FreeBSD.org> * Gustau Perez i Querol <gustau.perez@gmail.com> * Heinz Tschabitscher * Horia Racoviceanu <horia@racoviceanu.com> * Hye-Shik Chang <perky@fallin.lv> * Iblis Lin <iblis@hs.ntnu.edu.tw> * Issei Suzuki <issei@jp.FreeBSD.ORG> * Janni * Jason Harris <jharris@widomaker.com> * Javad Kouhi <javad.kouhi@gmail.com> * Jean-Yves Lefort <jylefort@FreeBSD.org> * Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw> * Joe Marcus Clarke <marcus@FreeBSD.org> * Johannes Dieterich <dieterich@ogolem.org> * Johannes M Dieterich <jmd@FreeBSD.org> * Johannes Meixner <johannes@perceivon.net> * John Marino <marino@FreeBSD.org> * Joseph Koshy <jkoshy@FreeBSD.org> * Ju Pengfei <ju.pengfei@gmail.com> * Jukka A. Ukkonen <jau@iki.fi> * Kay Lehmann <kay_lehmann@web.de> * Kevin Lo <kevlo@FreeBSD.org> * Klaus T. Aehlig <aehlig@linta.de> * Kubilay Kocak <koobs@FreeBSD.org> * Kurt Jaeger <fbsd-ports@opsec.eu> * Lars Engels <lme@FreeBSD.org> * Lars Koeller <Lars.Koeller@Uni-Bielefeld.DE> * Lars Koeller <Lars.Koeller@Uni-Bielefeld.de> * Li-Wen Hsu <lwhsu@FreeBSD.org> * Li-Wen Hsu <lwhsu@lwhsu.org> * M. L. Dodson, <bdodson@scms.utmb.edu> * Maho Nakata <maho@FreeBSD.org> * Mario S F Ferreira <lioux@FreeBSD.org> * Mario S F Ferreira <lioux@linf.unb.br> et al. * Mario Sergio Fujikawa Ferreira <lioux@FreeBSD.org> * Mark Felder <feld@FreeBSD.org> * Mark R V Murray <markm@FreeBSD.org> * Martin Matuska <mm@FreeBSD.org> * Matthew Seaman <matthew@FreeBSD.org> * Maurice Castro <maurice@serc.rmit.edu.au> * Maxim Sobolev <sobomax@FreeBSD.org> * Maxime Henrion <mux@FreeBSD.org> * Michael Haro <mharo@FreeBSD.org> * Michael Johnson <ahze@FreeBSD.org> * Michael Johnson <ahze@ahze.net> * Michael Neumann <mneumann@ntecs.de> * Muhammad Moinur Rahmanh <5u623l20@gmail.com> * NAKATA Maho <chat95@mbox.kyoto-inet.or.jp> * NAKATA, Maho <maho@FreeBSD.org> * Nakata Maho <maho@FreeBSD.org> * Nicola Vitale <nivit@email.it> * Olivier Duchateau * Pedro F. Giffuni * Pedro F. Giffuni <giffunip@asme.org> * Pedro Giffuni * Pedro Giffuni <giffunip@asme.org> * Pedro Giffuni <pfg@FreeBSD.org> * Peter Pentchev <roam@FreeBSD.org> * Philip Paeps <philip@FreeBSD.org> * Pierre-Paul Lavoie <ppl@nbnet.nb.ca> * Pietro Cerutti <gahr@FreeBSD.org> * Piotr Rybicki <meritus@innervision.pl> * Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Rainer Hurling <rhurlin@gwdg.de> * Robert Jenssen * Robin Schilham * Rod Taylor <ports@rbt.ca> * Roman Neuhauser <neuhauser@sigpipe.cz> * Sander Vesik <sander@haldjas.folklore.ee> * Scott Flatman <sf@dsinw.com> * Seamus Venasse <svenasse@polaris.ca> * Sergey A. Osokin <osa@FreeBSD.org> * Sergey Akifyev <asa@agava.com> * Sergey Akifyev <asa@gascom.ru> * Sergey Skvortsov <skv@FreeBSD.org> * Sergey Skvortsov <skv@protey.ru> * Shell Hung <shell@shellhung.org> * Shin-ya MURAKAMI <murashin@gfd-dennou.org> * Stas Timokhin <devel@stasyan.com> * Stefan A. Deutscher (sad@mailaps.org) * Stefan Esser <se@StefanEsser.FreeBSD.org> * Stephen Montgomery-Smith <stephen@FreeBSD.edu> * Stephen Montgomery-Smith <stephen@FreeBSD.org> * Stephen Montgomery-Smith <stephen@math.missouri.edu> * Stephen Montgomery-Smith <stephen@missouri.edu> * Steve Wills <steve@mouf.net> * Steve Wills <swills@FreeBSD.org> * Steven Kreuzer <skreuzer@FreeBSD.org> * Steven Kreuzer <skreuzer@f2o.org> * Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> * TAKATSU Tomonari <tota@FreeBSD.org> * Thierry Thomas (<thierry@pompo.net>) * Thierry Thomas <thierry@pompo.net> * Thomas Gellekum <tg@FreeBSD.org> * Thomas Sandford <freebsduser@paradisegreen.co.uk> * Timothy Bourke <timbob@bigpond.com> * Tony Maher * Tz-Huan Huang <tzhuan@csie.org> * Vsevolod Stakhov <vsevolod@FreeBSD.org> * Vsevolod Stakhov <vsevolod@highsecure.ru> * Waitman Gobble <waitman@waitman.net> * Wen Heping <wen@FreeBSD.org> * Wen Heping <wenheping@gmail.com> * Will Andrews <andrews@technologist.com> * Yi-Hsuan Hsin <mhsin@mhsin.org> * Ying-Chieh Liao <ijliao@FreeBSD.org> * Yinghong.Liu <relaxbsd@gmail.com> * Yoshiaki UCHIKAWA <yoshiaki@kt.rim.or.jp> * Yukihiro Nakai <Nakai@technologist.com> * Yuri Victorovich <yuri@FreeBSD.org> * Yuri Victorovich <yuri@rawbw.com> * Yuri Victorovich <yuri@tsoft.com> * Zhen REN <bg1tpt@gmail.com> * amir.husaini@gmail.com * arved * asami * b.f. <bf@FreeBSD.org> * bart <lbartoletti@FreeBSD.org> * bauerm * bf <bf2006a@yahoo.com> * bf <bf@FreeBSD.org> * bf@FreeBSD.org * bremner@unb.ca * chinsan * chuckr@FreeBSD.org * dawe <daweonline@gmail.com> * dbader@ece.unm.edu * dd * demon@FreeBSD.org * dikshie * eserte * fenner * gahr * giffunip * gmarco@giovannelli.it * gurkan@phys.ethz.ch * ijliao * janek@gaja.ipan.lublin.pl * jhs@berklix.com / asami (original) * jmz * js@jeannot.org * keith@FreeBSD.org * ljo * mr * nobu@rd.isac.co.jp * pauls@utdallas.edu * pusto@web.de * reg@shale.csir.co.za * rfarmer@predatorlabs.net * stephen@FreeBSD.org * thierry@pompo.net * tobez * will * # Created by Matthias Fechner <mfechner@FreeBSD.org> With hat: portmgrf53eb28489
math/gsl: update to 2.7.1 Update fixes libtool version numbers PR: 260201 Exp-run by: antoine96b1035458
math/gsl: update to 2.7 From [1] * What is new in gsl-2.7: * fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com) * fixed bug #60335 (spmatrix test failure, J. Lamb) * fixed bug #36577 * clarified documentation on interpolation accelerators (V. Krishnan) * fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M. Sitte) * fixed doc bug #59758 * fixed bug #58202 (rstat median for n=5) * added support for native C complex number types in gsl_complex when using a C11 compiler * upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6 * updated exponential fitting example for nonlinear least squares * added banded LU decomposition and solver (gsl_linalg_LU_band) * New functions added to the library: - gsl_matrix_norm1 - gsl_spmatrix_norm1 - gsl_matrix_complex_conjtrans_memcpy - gsl_linalg_QL: decomp, unpack - gsl_linalg_complex_QR_* (thanks to Christian Krueger) - gsl_vector_sum - gsl_matrix_scale_rows - gsl_matrix_scale_columns - gsl_multilarge_linear_matrix_ptr - gsl_multilarge_linear_rhs_ptr - gsl_spmatrix_dense_add (renamed from gsl_spmatrix_add_to_dense) - gsl_spmatrix_dense_sub - gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply - gsl_linalg_QR_UD: decomp, lssolve - gsl_linalg_QR_UU: decomp, lssolve, QTvec - gsl_linalg_QR_UZ: decomp - gsl_multifit_linear_lcurvature - gsl_spline2d_eval_extrap * bug fix in checking vector lengths in gsl_vector_memcpy (dieggsy@pm.me) * made gsl_sf_legendre_array_index() inline and documented - gsl_sf_legendre_nlm() [1] http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS PR: 256423 Exp-run by: antoine63e653adaa
Remove # $FreeBSD$ from Makefiles.305f148f48
math/gsl: don't use GCC to build on powerpc64 elfv2 Clang can build this port after r359086.9945d49758
math/gsl: fix build on powerpc64 elfv2 Clang 10 fails with assertion error (already reported): /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT cgbmv.lo -MD -MP -MF .deps/cgbmv.Tpo -c -o cgbmv.lo cgbmv.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT cgbmv.lo -MD -MP -MF .deps/cgbmv.Tpo -c cgbmv.c -fPIC -DPIC -o .libs/cgbmv.o Assertion failed: (HT.TopLevelMap[ThisEntry->getKey()] == ThisEntry && "Scope imbalance!"), function ~ScopedHashTableScope, file /usr/src/contrib/llvm-project/llvm/include/llvm/ADT/ScopedHashTable.h, line 245. Stack dump: 0. Program arguments: cc -DHAVE_CONFIG_H -I. -I.. -I.. -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -MT cgbmv.lo -MD -MP -MF .deps/cgbmv.Tpo -c cgbmv.c -fPIC -DPIC -o .libs/cgbmv.o 1. <eof> parser at end of file 2. Code generation 3. Running pass 'Function Pass Manager' on module 'cgbmv.c'. 4. Running pass 'Early CSE' on function '@cblas_cgbmv' #0 0x0000000013bac208 PrintStackTrace /usr/src/contrib/llvm-project/llvm/lib/Support/Unix/Signals.inc:564:13 #1 0x0000000013ba98d0 RunSignalHandlers /usr/src/contrib/llvm-project/llvm/lib/Support/Signals.cpp:67:5 #2 0x0000000013baf278 HandleCrash /usr/src/contrib/llvm-project/llvm/lib/Support/CrashRecoveryContext.cpp:75:7 #3 0x0000000013baf4ec CrashRecoverySignalHandler /usr/src/contrib/llvm-project/llvm/lib/Support/CrashRecoveryContext.cpp:0:51 #4 0x0000000815732748 handle_signal /usr/src/lib/libthr/thread/thr_sig.c:303:3 cc: error: clang frontend command failed due to signal (use -v to see invocation) FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-rc3-1-gc290cb61fdc) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin5e9c2bba5f
math/gsl: update to 2.6 - math/p5-Math-GSL does not seem to have any upstream activity to make it work with this version -> mark it broken - this also breaks the two consumers of this port - biology/gemma: has a conflict with cblas, and is makred broken. PR: 241363 Exp-run by: antoine4e896a50f8
Install texinfo files (GNU info) into ${PREFIX}/share/info
After a discussion on the mailing list on moving manpages to
${PREFIX}/share/man for consistency with base where it is
installed in usr/share/man, it appeared the same should happen
to GNU info files which were installed under share in base and
not in ports.
Now texinfo is not in base on any of the supported version of FreeBSD
it is possible to proceed to this move and it is easier to do than
the manpage change.
Other benefit than consistency are less patching: all build tools but
cmake are expecting info files to be under share/info and cmake (patched here)
was having an exception for BSD so the patch makes FreeBSD case less
specific for them
Bump revision of all impacted ports
PR: 232907
exp-run by: antoine
Differential Revision: https://reviews.freebsd.org/D178167990f81066Update math/gsl to 2.5 PR: 229067bb238a10bf
Update math/gsl to 2.4 Exp-Run by: antoine PR: 2204085da7ccc1fb
Update math/gsl to 2.3 This release introduces some new features and fixes several bugs: http://savannah.gnu.org/forum/forum.php?forum_id=8751 * update to 2.3 and take maintainership * update math/py-gsl to 2.2.0 for gsl2 support * update math/rubygem-rb-gsl to 2.1.0.2 for gsl2 support PR: 218952 Exp-run by: antoine Reviewed by: mat, rakuco Approved by: rakuco (mentor) Differential Revision: https://reviews.freebsd.org/D105228c99ed5982
${RM} already has -f.
PR: 213570
Submitted by: mat
Exp-run by: antoine
Sponsored by: Absolighteabbfd75e3Reset ports maintained by bf@ until he has time again to work on them. PR: 210474 Submitted by: jbeich With hat: portmgr-secretarya01b22a052
- Fix trailing whitespace in pkg-descrs, categories [g-n]* Approved by: portmgr blanket4e942b6419
Cleanup plist0dae2aca96
Fix all non-x86 builds of math/gsl with a more general approach than the specifically powerpc patch file. Drop patch-ieee-utils-fp-freebsd.c alltogether and change the order of #ifdefs in the setup to pull in fp-gnuc99.c instead of fp-freebsd.cc Verified on redports for x86 builds and am bumping port revision. Suggested by: nathanw Phabric: https://reviews.freebsd.org/D787 Reviewed by: nathanw Approved by: bdrewery (mentor)73ee5e70c5
math/gsl: - Add USES=libtool and bump dependent ports - Add USES=pathfix and INSTALL_TARGET=install-strip Approved by: portmgr (implicit, bump unstage port)c0f51fae12
Fix build on system built WITHOUT_INFO With hat: portmgr698f728a34
Attempt to fix the build on powerpc* by the same means used on Darwin and GNU/Linux PR: 179857 Submitted by: jhibbits, nwhitehorn6eb2d4a67a
- Stage support231e9ad4e9
Add NO_STAGE all over the place in preparation for the staging support (cat: math)ce5e457020
Update math/gsl to 1.16 and adjust some dependent ports6c4fa199d0
simplify the port and shrink the package by removing the extra PostScript documents07504e7a4d
- Remove WITH_FBSD10_FIX, is no longer needede1c6649edf
- Fix build on FreeBSD 10 Reported by: pointyhat69a39f5f38
Update math/gsl to 1.15, and adjust PORTREVISION and LIB_DEPENDS of dependent ports4fd0a4b1c1
- Get Rid MD5 supportbb86cbe5d2
Change my ports to use my FreeBSD.org email address.fb5116f2e7
Mark as broken on powerpc: does not compile. Hat: portmgr713b200e63
- Update to 1.14 PR: ports/144776 Submitted by: bf <bf1783@gmail.com> (maintainer)d53fd93f0b
Update to 1.13 PR: ports/138700 Submitted by: bf <bf1783 at gmail.com> (maintainer)8b1dce6212
- Update maintainer mail adresse Submitted by: "b. f." <bf1783@gmail.com> (maintainer via private mail)5af9456038
- Update to 1.12 PR: 129726 Submitted by: bf <bf2006a@yahoo.com> (maintainer)5b5364a368
Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. Specifically, newer autoconf (> 2.13) has different semantic of the configure target. In short, one should use --build=CONFIGURE_TARGET instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning and the old semantic may be removed in later autoconf releases.
To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.
To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.
Changes to Mk/*:
- Add runtime detection magic in bsd.port.mk
- Remove CONFIGURE_TARGET hack in various bsd.*.mk
- USE_GNOME=gnometarget is now an no-op
Changes to individual ports, other than removing the CONFIGURE_TARGET hack:
= pkg-plist changed (due to the ugly CONFIGURE_TARGET prefix in * executables)
- comms/gnuradio
- science/abinit
- science/elmer-fem
- science/elmer-matc
- science/elmer-meshgen2d
- science/elmerfront
- science/elmerpost
= use x86_64 as ARCH
- devel/g-wrap
= other changes
- print/magicfilter
GNU_CONFIGURE -> HAS_CONFIGURE since it's not generated by autoconf
Total # of ports modified: 1,027
Total # of ports affected: ~7,000 (set GNU_CONFIGURE to yes)
PR: 126524 (obsoletes 52917)
Submitted by: rafan
Tested on: two pointyhat 7-amd64 exp runs (by pav)
Approved by: portmgr (pav)741aa71483- Add regression-test target PR: 124764 Submitted by: "Pedro F. Giffuni" <pfgshield-freebsd@yahoo.com> Approved by: maintainerb64ab29c41
- Update to 1.11 - Update pkg-descr - Update pkg-plist PR: ports/122325 Submitted by: bf <bf2006a@yahoo.com> (maintainer) Approved by: thierry (mentor)cd913698b2
- Fix fetch in NOPORTDOCS case PR: ports/118125 Submitted by: bf <bf2006a@yahoo.com> (maintainer)a424942460
[PATCH]math/gsl: update to 1.10 PR: ports/116506 Submitted by: bf <bf2006a@yahoo.com>50e29a5e62
upgrade to 1.9 pass maintainership to bf2006a@yahoo.com PR: 109548 Submitted by: me Approved by: maintainer timeout (over 2 months)59d5387029
- Update to 1.8 - Take maintainership PR: 96733 Submitted by: Rainer Alves <rainer.alves___gmail.com>ff5d44386a
Reset maintainer by request. Approved by: portmgr (marcus)f6862b0e25
Conversion to a single libtool environment. Approved by: portmgr (kris)8503536d38