math/octave-forge-dicom 0.7.3

ath/octave-forge-dicom: Update to 0.7.3.

math/octave: Update to 11.3.0.

- Bump portrevision of all octave-forge-* ports because of major
  update to version number of liboctinterp.so.

math/octave: Update to 11.2.0.

- Bump portrevision of octave-forge-* ports, because of major version
  number change for liboctinterp.so.

math/octave-forge-dicom: Update to 0.7.2.

math/octave: Update to 11.1.0.

- Bump portrevision of dependent ports.

math/octave-forge-dicom: Update to 0.7.1.

math/octave-forge-*: Fix spelling error in pkg-descr.

math/octave-forge-dicom: Update to 0.6.1.

category/port: math/octave-forge-*

Bump port revision because of library update in math/octave.

math/octave: Update to 9.1.0.

math/octave-forge: Bump portrevision.
Mark broken and set optional dependency to off in math/octave-forge:

math/octave-forge-bioinfo
math/octave-forge-coder
math/octave-forge-financial
math/octave-forge-fits
math/octave-forge-fuzzy-logic-toolkit
math/octave-forge-gnuplot
math/octave-forge-informationtheory
math/octave-forge-irsa
math/octave-forge-level-set
math/octave-forge-nnet
math/octave-forge-plot
math/octave-forge-queueing
math/octave-forge-symband

math/octave-forge-dicom: Update to 0.6.0.

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

math/octave: Update to 8.1.0.

Bump portrevision of all dependent ports.

Mark broken math/octave-forge-database, math/octave-forge-mechanics,
math/octave-forge-mpi math/octave-forge-nlwing2,
math/octave-forge-parallel, math/octave-forge-specfun

Set to default off these ports in math/octave-forge.

Clean up indentation in Mk/Uses/octave.mk.

Mk/**octave.mk: Convert to USES=octave

As part of the improvements of USES infrastructure Mk/bsd.octave.mk has
been converted to Mk/Uses/octave.mk. This also declutters some old
stuffs in the octave-* ports and makes it simpler to add more
octave-forge ports easily.

While I am here make all the ports portclippy/portfmt compliant. And use
USES macros whenever possible.

Reviewed by:	portmgr
Approved by:	tcberner
Differential Revision:	https://reviews.freebsd.org/D37887

math/octave-forge-dicom: Update to 0.5.1.

*/octave-forge-*: Update WWW field.

Mk/bsd.octave.mk: Change name of tarball created.

Bump port revision of math/octave-forge-ponchon-savarit.

Mk/bsd.octave.mk: move some functions from mk to ports.

*/*: Update path set in BUILD_DEPENDS for CMake

Commit b23ea4e2d2f51b53d8915fe9fd7b4efbdd575e38 changed its location to
devel/cmake-core

Approved by:	portmgr (blanket)

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
  *  Anton Berezin <tobez@FreeBSD.org>
  *  Anton Berezin <tobez@plab.ku.dk>
  *  Anton Berezin <tobez@tobez.org>
  *  Anton Shterenlikht
  *  Anton Shterenlikht <mexas@bris.ac.uk>
  *  Bob Eager <bob@eager.cx>
  *  Charlie Kester <corky1951@comcast.net>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Cheng-Lung Sung <clsung@dragon2.net>
  *  Chris D. Faulhaber <jedgar@fxp.org>
  *  Christopher J. Ruwe
  *  Christopher Key <cjk32@cam.ac.uk>
  *  Chuck Hein <geekdude@pacbell.net>
  *  Cyrille Szymanski <cnszym@gmail.com>
  *  Dan Rue <drue@therub.org>
  *  Danilo Egea Gondolfo <danilo@FreeBSD.org>
  *  David Naylor <dbn@FreeBSD.org>
  *  David Naylor <naylor.b.david@gmail.com>
  *  Dereckson <dereckson@gmail.com>
  *  Devin Teske <dteske@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Dmitry Sivachenko <mitya@yandex-team.ru>
  *  Don Croyle <croyle@gelemna.org>
  *  Douglas K. Rand (rand@meridian-enviro.com)
  *  Dylan Simon <dylan@dylex.net>
  *  Edwin Groothuis <edwin@mavetju.org>
  *  Eijiro Shibusawa <ej-sib@ice.uec.ac.jp>
  *  Emanuel Haupt <ehaupt@FreeBSD.org>
  *  Eoin Lawless (eoin@maths.tcd.ie)
  *  Eric A. Griff <eagriff@global2000.net>
  *  Eric van Gyzen <vangyzen@stat.duke.edu>
  *  Ewgenij Gawrilow <gawrilow@math.tu-berlin.de>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Foxfair Hu <foxfair@FreeBSD.org>
  *  Frederic Han <han@math.jussieu.fr>
  *  Gabor Kovesdan <gabor@FreeBSD.org>
  *  Gea-Suan Lin <gslin@gslin.org>
  *  George Reid <greid@ukug.uk.freebsd.org>
  *  Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com>
  *  Greg Larkin <glarkin@FreeBSD.org>
  *  Guangyuan Yang <ygy@FreeBSD.org>
  *  Gustau Perez i Querol <gustau.perez@gmail.com>
  *  Heinz Tschabitscher
  *  Horia Racoviceanu <horia@racoviceanu.com>
  *  Hye-Shik Chang <perky@fallin.lv>
  *  Iblis Lin <iblis@hs.ntnu.edu.tw>
  *  Issei Suzuki <issei@jp.FreeBSD.ORG>
  *  Janni
  *  Jason Harris <jharris@widomaker.com>
  *  Javad Kouhi <javad.kouhi@gmail.com>
  *  Jean-Yves Lefort <jylefort@FreeBSD.org>
  *  Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
  *  Joe Marcus Clarke <marcus@FreeBSD.org>
  *  Johannes Dieterich <dieterich@ogolem.org>
  *  Johannes M Dieterich <jmd@FreeBSD.org>
  *  Johannes Meixner <johannes@perceivon.net>
  *  John Marino <marino@FreeBSD.org>
  *  Joseph Koshy <jkoshy@FreeBSD.org>
  *  Ju Pengfei <ju.pengfei@gmail.com>
  *  Jukka A. Ukkonen <jau@iki.fi>
  *  Kay Lehmann <kay_lehmann@web.de>
  *  Kevin Lo <kevlo@FreeBSD.org>
  *  Klaus T. Aehlig <aehlig@linta.de>
  *  Kubilay Kocak <koobs@FreeBSD.org>
  *  Kurt Jaeger <fbsd-ports@opsec.eu>
  *  Lars Engels <lme@FreeBSD.org>
  *  Lars Koeller <Lars.Koeller@Uni-Bielefeld.DE>
  *  Lars Koeller <Lars.Koeller@Uni-Bielefeld.de>
  *  Li-Wen Hsu <lwhsu@FreeBSD.org>
  *  Li-Wen Hsu <lwhsu@lwhsu.org>
  *  M. L. Dodson, <bdodson@scms.utmb.edu>
  *  Maho Nakata <maho@FreeBSD.org>
  *  Mario S F Ferreira <lioux@FreeBSD.org>
  *  Mario S F Ferreira <lioux@linf.unb.br> et al.
  *  Mario Sergio Fujikawa Ferreira <lioux@FreeBSD.org>
  *  Mark Felder <feld@FreeBSD.org>
  *  Mark R V Murray <markm@FreeBSD.org>
  *  Martin Matuska <mm@FreeBSD.org>
  *  Matthew Seaman <matthew@FreeBSD.org>
  *  Maurice Castro <maurice@serc.rmit.edu.au>
  *  Maxim Sobolev <sobomax@FreeBSD.org>
  *  Maxime Henrion <mux@FreeBSD.org>
  *  Michael Haro <mharo@FreeBSD.org>
  *  Michael Johnson <ahze@FreeBSD.org>
  *  Michael Johnson <ahze@ahze.net>
  *  Michael Neumann <mneumann@ntecs.de>
  *  Muhammad Moinur Rahmanh <5u623l20@gmail.com>
  *  NAKATA Maho <chat95@mbox.kyoto-inet.or.jp>
  *  NAKATA, Maho <maho@FreeBSD.org>
  *  Nakata Maho <maho@FreeBSD.org>
  *  Nicola Vitale <nivit@email.it>
  *  Olivier Duchateau
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni <giffunip@asme.org>
  *  Pedro Giffuni
  *  Pedro Giffuni <giffunip@asme.org>
  *  Pedro Giffuni <pfg@FreeBSD.org>
  *  Peter Pentchev <roam@FreeBSD.org>
  *  Philip Paeps <philip@FreeBSD.org>
  *  Pierre-Paul Lavoie <ppl@nbnet.nb.ca>
  *  Pietro Cerutti <gahr@FreeBSD.org>
  *  Piotr Rybicki <meritus@innervision.pl>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Rainer Hurling <rhurlin@gwdg.de>
  *  Robert Jenssen
  *  Robin Schilham
  *  Rod Taylor <ports@rbt.ca>
  *  Roman Neuhauser <neuhauser@sigpipe.cz>
  *  Sander Vesik <sander@haldjas.folklore.ee>
  *  Scott Flatman <sf@dsinw.com>
  *  Seamus Venasse <svenasse@polaris.ca>
  *  Sergey A. Osokin <osa@FreeBSD.org>
  *  Sergey Akifyev <asa@agava.com>
  *  Sergey Akifyev <asa@gascom.ru>
  *  Sergey Skvortsov <skv@FreeBSD.org>
  *  Sergey Skvortsov <skv@protey.ru>
  *  Shell Hung <shell@shellhung.org>
  *  Shin-ya MURAKAMI <murashin@gfd-dennou.org>
  *  Stas Timokhin <devel@stasyan.com>
  *  Stefan A. Deutscher (sad@mailaps.org)
  *  Stefan Esser <se@StefanEsser.FreeBSD.org>
  *  Stephen Montgomery-Smith <stephen@FreeBSD.edu>
  *  Stephen Montgomery-Smith <stephen@FreeBSD.org>
  *  Stephen Montgomery-Smith <stephen@math.missouri.edu>
  *  Stephen Montgomery-Smith <stephen@missouri.edu>
  *  Steve Wills <steve@mouf.net>
  *  Steve Wills <swills@FreeBSD.org>
  *  Steven Kreuzer <skreuzer@FreeBSD.org>
  *  Steven Kreuzer <skreuzer@f2o.org>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  TAKATSU Tomonari <tota@FreeBSD.org>
  *  Thierry Thomas (<thierry@pompo.net>)
  *  Thierry Thomas <thierry@pompo.net>
  *  Thomas Gellekum <tg@FreeBSD.org>
  *  Thomas Sandford <freebsduser@paradisegreen.co.uk>
  *  Timothy Bourke <timbob@bigpond.com>
  *  Tony Maher
  *  Tz-Huan Huang <tzhuan@csie.org>
  *  Vsevolod Stakhov <vsevolod@FreeBSD.org>
  *  Vsevolod Stakhov <vsevolod@highsecure.ru>
  *  Waitman Gobble <waitman@waitman.net>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Will Andrews <andrews@technologist.com>
  *  Yi-Hsuan Hsin <mhsin@mhsin.org>
  *  Ying-Chieh Liao <ijliao@FreeBSD.org>
  *  Yinghong.Liu <relaxbsd@gmail.com>
  *  Yoshiaki UCHIKAWA <yoshiaki@kt.rim.or.jp>
  *  Yukihiro Nakai <Nakai@technologist.com>
  *  Yuri Victorovich <yuri@FreeBSD.org>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  Yuri Victorovich <yuri@tsoft.com>
  *  Zhen REN <bg1tpt@gmail.com>
  *  amir.husaini@gmail.com
  *  arved
  *  asami
  *  b.f. <bf@FreeBSD.org>
  *  bart <lbartoletti@FreeBSD.org>
  *  bauerm
  *  bf <bf2006a@yahoo.com>
  *  bf <bf@FreeBSD.org>
  *  bf@FreeBSD.org
  *  bremner@unb.ca
  *  chinsan
  *  chuckr@FreeBSD.org
  *  dawe <daweonline@gmail.com>
  *  dbader@ece.unm.edu
  *  dd
  *  demon@FreeBSD.org
  *  dikshie
  *  eserte
  *  fenner
  *  gahr
  *  giffunip
  *  gmarco@giovannelli.it
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  janek@gaja.ipan.lublin.pl
  *  jhs@berklix.com / asami (original)
  *  jmz
  *  js@jeannot.org
  *  keith@FreeBSD.org
  *  ljo
  *  mr
  *  nobu@rd.isac.co.jp
  *  pauls@utdallas.edu
  *  pusto@web.de
  *  reg@shale.csir.co.za
  *  rfarmer@predatorlabs.net
  *  stephen@FreeBSD.org
  *  thierry@pompo.net
  *  tobez
  *  will
  * # Created by Matthias Fechner <mfechner@FreeBSD.org>

With hat:	portmgr

math/octave-forge-dicom: Update to 0.5.0.

math/octave: commits that should have accompanied cc8553afd083.

math/octave-forge-dicom: Update to 0.4.1.

math/octave: Update to 6.3.0.

Also bump revision of dependent octave-forge-* ports.

Remove # $FreeBSD$ from Makefiles.

- Update math/octave to 6.2.0. - Bump portrevision of dependent ports. - Add patches to dependent ports math/octave-forge-* if I can figure them out. - Mark broken dependent ports I couldn't figure out.

- Update to 0.4.0.

- Update devel/gdcm to 3.0.7. - Bump portrevision of dependent ports.

- Update devel/gdcm to 3.0.6. - Bump portrevision of dependent ports.

- Update to 0.3.0.

- Update devel/gdcm to 3.0.5. - Bump portrevision of dependent ports.

- Update devel/gdcm to 3.0.4. - Bump portrevision of dependent ports.

- Update devel/gdcm to 3.0.3. - Bump portrevision of dependent ports.

- Update devel/gdcm to 3.0.2. - Bump portrevision of dependent ports.

Bump PORTREVISION for ports depending on the canonical version of GCC as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

- configure requires cmake to work properly.

Reported by:	pkg-fallout@

- Update devel/gdcm to 3.0.0. - Bump portrevision of dependent ports.

- Update to 0.2.2. - Unbreak.

- Update math/octave to 5.1.0. - Bump portrevision of unbroken octave-forge-* ports. - Bump portrevision of math/dynare which uses library files from octave. - Mark broken: octave-forge-(database|dicom|optim|fits|linear|linear|optim|   parallel|signal|strings|struct|tisean|video). - Broken optional dependencies in math/octave-forge to default to off. - Bump portrevision of math/octave-forge.

- Update devel/gdcm to 2.8.9. - Bump portrevision for dependent ports.

Fix Qt5 symbol version scripts to put the catch-all clause first.  When a symbol matches multiple clauses the last one takes precedence.  If the catch-all is last it captures everything.  In the case of Qt5 libraries this caused all symbols to have a Qt_5 label while some should have Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call
in the weak wrapper resolves to the weak wrapper itself creating an infinite
call loop that overflows the stack and causes a crash.  Some of the
allocation functions are variants of C++ new and delete and it probably
depends on the compiler whether these variants are used in other parts of
Qt5Webengine.

Remove the weak wrappers (make them Linux specific).  This isn't binary
compatible but we are already breaking that with the changes to the symbol
versions.

[1] https://github.com/qt/qtwebengine/commit/5c2cbfccf9aafb547b0b30914c4056abd25942a4
[2] https://github.com/qt/qtwebengine/commit/2ed5054e3a800fa97c2c9e920ba1e6ea4b6ef2a5
[3] https://github.com/qt/qtwebengine/commit/009f5ebb4bd6e50188671e0815a5dae6afe39db5

Bump all ports that depend on Qt5.

PR:		234070
Exp-run by:	antoine
Approved by:	kde (adridg)

Bump PORTREVISION for ports depending on the canonical version of GCC defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

- Take maintainership of devel/gdcm. - Update devel/gdcm to 2.8.8. - Bump portrevision of dependent ports.

- Update math/octave to 4.4.1. - Bump portrevision for all octave-forge-* ports.

Bump PORTREVISION for ports depending on the canonical version of GCC in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

- Update octave to 4.4.0. - Either bump portrevision or mark broken for octave-forge-* ports. - Bump port revision for octave-forge.

- Resurrect math/octave-forge-dicom. - Update to 0.2.1.

Remove expired port: 2016-11-01 math/octave-forge-dicom: Broken for more than 6 months