math/p5-NetCDF 1.2.4_9

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
  *  Anton Berezin <tobez@FreeBSD.org>
  *  Anton Berezin <tobez@plab.ku.dk>
  *  Anton Berezin <tobez@tobez.org>
  *  Anton Shterenlikht
  *  Anton Shterenlikht <mexas@bris.ac.uk>
  *  Bob Eager <bob@eager.cx>
  *  Charlie Kester <corky1951@comcast.net>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Cheng-Lung Sung <clsung@dragon2.net>
  *  Chris D. Faulhaber <jedgar@fxp.org>
  *  Christopher J. Ruwe
  *  Christopher Key <cjk32@cam.ac.uk>
  *  Chuck Hein <geekdude@pacbell.net>
  *  Cyrille Szymanski <cnszym@gmail.com>
  *  Dan Rue <drue@therub.org>
  *  Danilo Egea Gondolfo <danilo@FreeBSD.org>
  *  David Naylor <dbn@FreeBSD.org>
  *  David Naylor <naylor.b.david@gmail.com>
  *  Dereckson <dereckson@gmail.com>
  *  Devin Teske <dteske@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Dmitry Sivachenko <mitya@yandex-team.ru>
  *  Don Croyle <croyle@gelemna.org>
  *  Douglas K. Rand (rand@meridian-enviro.com)
  *  Dylan Simon <dylan@dylex.net>
  *  Edwin Groothuis <edwin@mavetju.org>
  *  Eijiro Shibusawa <ej-sib@ice.uec.ac.jp>
  *  Emanuel Haupt <ehaupt@FreeBSD.org>
  *  Eoin Lawless (eoin@maths.tcd.ie)
  *  Eric A. Griff <eagriff@global2000.net>
  *  Eric van Gyzen <vangyzen@stat.duke.edu>
  *  Ewgenij Gawrilow <gawrilow@math.tu-berlin.de>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Foxfair Hu <foxfair@FreeBSD.org>
  *  Frederic Han <han@math.jussieu.fr>
  *  Gabor Kovesdan <gabor@FreeBSD.org>
  *  Gea-Suan Lin <gslin@gslin.org>
  *  George Reid <greid@ukug.uk.freebsd.org>
  *  Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com>
  *  Greg Larkin <glarkin@FreeBSD.org>
  *  Guangyuan Yang <ygy@FreeBSD.org>
  *  Gustau Perez i Querol <gustau.perez@gmail.com>
  *  Heinz Tschabitscher
  *  Horia Racoviceanu <horia@racoviceanu.com>
  *  Hye-Shik Chang <perky@fallin.lv>
  *  Iblis Lin <iblis@hs.ntnu.edu.tw>
  *  Issei Suzuki <issei@jp.FreeBSD.ORG>
  *  Janni
  *  Jason Harris <jharris@widomaker.com>
  *  Javad Kouhi <javad.kouhi@gmail.com>
  *  Jean-Yves Lefort <jylefort@FreeBSD.org>
  *  Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
  *  Joe Marcus Clarke <marcus@FreeBSD.org>
  *  Johannes Dieterich <dieterich@ogolem.org>
  *  Johannes M Dieterich <jmd@FreeBSD.org>
  *  Johannes Meixner <johannes@perceivon.net>
  *  John Marino <marino@FreeBSD.org>
  *  Joseph Koshy <jkoshy@FreeBSD.org>
  *  Ju Pengfei <ju.pengfei@gmail.com>
  *  Jukka A. Ukkonen <jau@iki.fi>
  *  Kay Lehmann <kay_lehmann@web.de>
  *  Kevin Lo <kevlo@FreeBSD.org>
  *  Klaus T. Aehlig <aehlig@linta.de>
  *  Kubilay Kocak <koobs@FreeBSD.org>
  *  Kurt Jaeger <fbsd-ports@opsec.eu>
  *  Lars Engels <lme@FreeBSD.org>
  *  Lars Koeller <Lars.Koeller@Uni-Bielefeld.DE>
  *  Lars Koeller <Lars.Koeller@Uni-Bielefeld.de>
  *  Li-Wen Hsu <lwhsu@FreeBSD.org>
  *  Li-Wen Hsu <lwhsu@lwhsu.org>
  *  M. L. Dodson, <bdodson@scms.utmb.edu>
  *  Maho Nakata <maho@FreeBSD.org>
  *  Mario S F Ferreira <lioux@FreeBSD.org>
  *  Mario S F Ferreira <lioux@linf.unb.br> et al.
  *  Mario Sergio Fujikawa Ferreira <lioux@FreeBSD.org>
  *  Mark Felder <feld@FreeBSD.org>
  *  Mark R V Murray <markm@FreeBSD.org>
  *  Martin Matuska <mm@FreeBSD.org>
  *  Matthew Seaman <matthew@FreeBSD.org>
  *  Maurice Castro <maurice@serc.rmit.edu.au>
  *  Maxim Sobolev <sobomax@FreeBSD.org>
  *  Maxime Henrion <mux@FreeBSD.org>
  *  Michael Haro <mharo@FreeBSD.org>
  *  Michael Johnson <ahze@FreeBSD.org>
  *  Michael Johnson <ahze@ahze.net>
  *  Michael Neumann <mneumann@ntecs.de>
  *  Muhammad Moinur Rahmanh <5u623l20@gmail.com>
  *  NAKATA Maho <chat95@mbox.kyoto-inet.or.jp>
  *  NAKATA, Maho <maho@FreeBSD.org>
  *  Nakata Maho <maho@FreeBSD.org>
  *  Nicola Vitale <nivit@email.it>
  *  Olivier Duchateau
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni <giffunip@asme.org>
  *  Pedro Giffuni
  *  Pedro Giffuni <giffunip@asme.org>
  *  Pedro Giffuni <pfg@FreeBSD.org>
  *  Peter Pentchev <roam@FreeBSD.org>
  *  Philip Paeps <philip@FreeBSD.org>
  *  Pierre-Paul Lavoie <ppl@nbnet.nb.ca>
  *  Pietro Cerutti <gahr@FreeBSD.org>
  *  Piotr Rybicki <meritus@innervision.pl>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Rainer Hurling <rhurlin@gwdg.de>
  *  Robert Jenssen
  *  Robin Schilham
  *  Rod Taylor <ports@rbt.ca>
  *  Roman Neuhauser <neuhauser@sigpipe.cz>
  *  Sander Vesik <sander@haldjas.folklore.ee>
  *  Scott Flatman <sf@dsinw.com>
  *  Seamus Venasse <svenasse@polaris.ca>
  *  Sergey A. Osokin <osa@FreeBSD.org>
  *  Sergey Akifyev <asa@agava.com>
  *  Sergey Akifyev <asa@gascom.ru>
  *  Sergey Skvortsov <skv@FreeBSD.org>
  *  Sergey Skvortsov <skv@protey.ru>
  *  Shell Hung <shell@shellhung.org>
  *  Shin-ya MURAKAMI <murashin@gfd-dennou.org>
  *  Stas Timokhin <devel@stasyan.com>
  *  Stefan A. Deutscher (sad@mailaps.org)
  *  Stefan Esser <se@StefanEsser.FreeBSD.org>
  *  Stephen Montgomery-Smith <stephen@FreeBSD.edu>
  *  Stephen Montgomery-Smith <stephen@FreeBSD.org>
  *  Stephen Montgomery-Smith <stephen@math.missouri.edu>
  *  Stephen Montgomery-Smith <stephen@missouri.edu>
  *  Steve Wills <steve@mouf.net>
  *  Steve Wills <swills@FreeBSD.org>
  *  Steven Kreuzer <skreuzer@FreeBSD.org>
  *  Steven Kreuzer <skreuzer@f2o.org>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  TAKATSU Tomonari <tota@FreeBSD.org>
  *  Thierry Thomas (<thierry@pompo.net>)
  *  Thierry Thomas <thierry@pompo.net>
  *  Thomas Gellekum <tg@FreeBSD.org>
  *  Thomas Sandford <freebsduser@paradisegreen.co.uk>
  *  Timothy Bourke <timbob@bigpond.com>
  *  Tony Maher
  *  Tz-Huan Huang <tzhuan@csie.org>
  *  Vsevolod Stakhov <vsevolod@FreeBSD.org>
  *  Vsevolod Stakhov <vsevolod@highsecure.ru>
  *  Waitman Gobble <waitman@waitman.net>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Will Andrews <andrews@technologist.com>
  *  Yi-Hsuan Hsin <mhsin@mhsin.org>
  *  Ying-Chieh Liao <ijliao@FreeBSD.org>
  *  Yinghong.Liu <relaxbsd@gmail.com>
  *  Yoshiaki UCHIKAWA <yoshiaki@kt.rim.or.jp>
  *  Yukihiro Nakai <Nakai@technologist.com>
  *  Yuri Victorovich <yuri@FreeBSD.org>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  Yuri Victorovich <yuri@tsoft.com>
  *  Zhen REN <bg1tpt@gmail.com>
  *  amir.husaini@gmail.com
  *  arved
  *  asami
  *  b.f. <bf@FreeBSD.org>
  *  bart <lbartoletti@FreeBSD.org>
  *  bauerm
  *  bf <bf2006a@yahoo.com>
  *  bf <bf@FreeBSD.org>
  *  bf@FreeBSD.org
  *  bremner@unb.ca
  *  chinsan
  *  chuckr@FreeBSD.org
  *  dawe <daweonline@gmail.com>
  *  dbader@ece.unm.edu
  *  dd
  *  demon@FreeBSD.org
  *  dikshie
  *  eserte
  *  fenner
  *  gahr
  *  giffunip
  *  gmarco@giovannelli.it
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  janek@gaja.ipan.lublin.pl
  *  jhs@berklix.com / asami (original)
  *  jmz
  *  js@jeannot.org
  *  keith@FreeBSD.org
  *  ljo
  *  mr
  *  nobu@rd.isac.co.jp
  *  pauls@utdallas.edu
  *  pusto@web.de
  *  reg@shale.csir.co.za
  *  rfarmer@predatorlabs.net
  *  stephen@FreeBSD.org
  *  thierry@pompo.net
  *  tobez
  *  will
  * # Created by Matthias Fechner <mfechner@FreeBSD.org>

With hat:	portmgr

science/netcdf: Update to 4.8.1

- Update MASTER_SITES
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/Unidata/netcdf-c/releases

Remove # $FreeBSD$ from Makefiles.

Bump PORTREVISION for science/netcdf shlib change

Multiple ports: improve regex compliance

These changes largely fall into just two categories:

1. Need textproc/gsed for GNU extensions
2. Extraneous escapes that can go away

For #1, there's a further subdivision into those that require autoconf magic
and those that can get away with BINARY_ALIAS=sed=${LOCALBASE}/bin/gsed.
-CURRENT will soon gain GNU extensions, but these will take longer to get to
all supported releases; we must switch them to gsed to ensure we're actually
properly building them as intended.

For #2, I've fixed these as I can and we should upstream these fixes.

PORTREVISION is bumped for all of the above, because we will almost
certainly build these differently when the replacements actually start
working.

These were all detected by the below-referenced exp-run [1]. The patch
included forbids many ordinary characters from being escaped, since we'll
later imbue those with special meanings. This has had the nice side effect
of picking up various things that we didn't handle properly, e.g. \t and \r
for tab and carriage return.

PR:		229925 [1]
Approved by:	koobs (mentor)
Approved by:	portmgr (blanket: trivial build fixes)
MFH:		no (invasive risk)
Differential Revision:	https://reviews.freebsd.org/D25185

Update science/netcdf to 4.6.3

- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/Unidata/netcdf-c/releases
		https://github.com/Unidata/netcdf-c/blob/master/RELEASE_NOTES.md

Update to 4.5.0

- Pet portlint: reorder LICENSE knobs

Changes:	https://github.com/Unidata/netcdf-c/releases

Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight

Fix usage of ${PERL5}.

${PERL5} points to a specific version of perl, say, perl5.22.1, it is
fine to use it in a ports Makefile to do Perly things, but ports using
it must use ${PERL}, that points to /usr/local/bin/perl so that if the
minor version is updated, the shebang keep working.

While there, make some ports use shebangfix, regen a few patches, and
bump PORTREVISION where a shebang went from PERL5 to PERL.

PR:		205367
With hat:	portmgr
Sponsored by:	Absolight

Make it so that the default Perl is always called perl5.

- Move Perl's man1 files along with its man3 files.
- Move where Perl installs its modules man1 pages.
- Convert the ports installing man1 pages.
- Make different Perl versions installable at the same time.
  Though you should note that only the default version can be used to
  install Perl modules, and the non default Perl versions cannot use the
  modules installed via ports if they contain .so as they are installed
  in a version specific directory.

Reviewed by:	bapt (the Mk bits)
Exp-run by:	antoine
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D3542

Change the way Perl modules are installed, update the default Perl to 5.18.

Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
Perl version, minimizing the upgrade when the major Perl version is changed.
It uses a version dependent directory for modules with compiled bits.

As PERL_ARCH is no longer needed in plists, it has been removed from
PLIST_SUB.

The USE_PERL5=fixpacklist keyword is removed, the .packlist file is now
always removed, as is perllocal.pod.

The old site_perl and site_perl/arch directories have been kept in the
default Perl @INC for all Perl ports, and will be phased out as these old
Perl versions expire.

PR:		194969
Differential Revision:	https://reviews.freebsd.org/D1019
Exp-run by:	antoine
Reviewed by:	perl@
Approved by:	portmgr

Remove all the bootstrap files (.bs) from the plists.

Starting with perl 5.20, they're not installed any more if empty,
and on FreeBSD, they're (always ?) empty.

PR:		190681
Submitted by:	mat
Exp-Run by:	antoine
Sponsored by:	Absolight

- Update to 4.3.2 (from science/netcdf4) - Bump PORTREVISION for science/netcdf shlib change and   dependency change from science/netcdf4 to science/netcdf [1]

Changes:	http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html
Approved by:	portmgr (bapt) [1]

Suppor stage

Add NO_STAGE all over the place in preparation for the staging support (cat: math)

- convert to the new perl5 framework - trim Makefile header

Approved by:	portmgr (bapt@, blanket)

- Bump PORTREVISION for science/netcdf4 shlib change

- Get Rid MD5 support

- Update to 1.2.4

PR:		ports/146177
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
Approved by:	maintainer

- Update science/netcdf4 to 4.0.1 - Bump PORTREVISION for dependent ports

PR:		ports/136377
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net> (maintainer)
Feature safe:	yes

- Update to 1.2.3 - Add support for netCDF 4

PR:		ports/130721
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net>
Approved by:	"Douglas K. Rand" <rand at meridian-enviro.com> (maintainer)

science/netcdf - Update to 3.6.2

graphics/gmt
math/grace
math/gri
math/p5-NetCDF
math/py-scientific
math/ruby-netcdf
science/gnudatalanguage
science/minc
science/minc2
science/v_sim
science/vis5d+
- Bump PORTREVISION for the changing of science/netcdf's major library version number

PR:		111347
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
Approved by:	clsung (mentor)

Repocopy math/netcdf to science/netcdf, along with cdf, hdf and hdf5.

PR:		92497
Submitted by:	/me
Repocopied by:	marcus

SHA256ify

Approved by: krion@

Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry

Approved by:    krion@
PR:             ports/88711 (related)

- remove doc_*_install target to avoid install perllocal.pod - add some minor fixes and make it portlint clean

PR:		78135
Submitted by:	leeym
Approved by:	rand@meridian-enviro.com

BROKEN: Installs perllocal.pod file

Fix MASTER_SITES and rename distfile.

PR:		ports/77749
Submitted by:	maintainer

- Add missed dependency on Perl

Reported by:	bento via kris

- Add p5-NetCDF, a perl module to read and write netCDF files.

PR:		ports/59381
Submitted by:	Douglas K. Rand <rand@meridian-enviro.com>