math/py-fastcluster: Update version requirement of RUN_DEPENDS - Bump PORTREVISION for package change85d8efed85
Port details
math/py-fastcluster 1.3.0_3
Fast hierarchical clustering routines for R and Python
Port info
- Maintainer
- sunpoet@FreeBSD.org
- Packages
- latest: 1.3.0_3
- Upstream
- up to date
- Last update
- to 1.3.0_3 · 85d8efed85
- Quarterly
- 2026Q4: 1.3.0_3
- WWW
- http://danifold.net/fastcluster.html
- Links
- cgit · VuXML
Install
- Package
# pkg install py312-fastclusterinstalls 1.3.0_3 fromlatest; fromquarterly(2026Q4) 1.3.0_3- Port
# cd /usr/ports/math/py-fastcluster && make install clean- Size
- 39 KiB download · 122 KiB installed
- Depends on
- lang/python312 3.12.15, math/py-numpy 2.4.6_1,1
- License
- BSD2CLAUSE
Packages by version and architecture
latest
| FreeBSD version | amd64 | aarch64 | i386 |
|---|---|---|---|
| FreeBSD 16 | 1.3.0_3 | 1.3.0_3 | – |
| FreeBSD 15 | 1.3.0_3 | 1.3.0_3 | – |
| FreeBSD 14 | 1.3.0_3 | 1.3.0_3 | 1.3.0_3 |
quarterly (2026Q4)
| FreeBSD version | amd64 | aarch64 | i386 |
|---|---|---|---|
| FreeBSD 15 | 1.3.0_3 | 1.3.0_3 | – |
| FreeBSD 14 | 1.3.0_3 | 1.3.0_3 | 1.3.0_3 |
version as in the ports tree (latest) or the most common one (quarterly) · different version · ✗ not built · – no packages for this platform. Package sets that have not been rebuilt for 60 days are left out.
Unaddressed and VuXML only (0)
No unaddressed CVE and nothing reported by
pkg audit for the packaged version 1.3.0_3.Fixed (0)
No VuXML entries for this package.
Problem reports (0) · open in Bugzilla, most recently changed first
None.
Commits (47)
*/py-*: Update version requirement of *_DEPENDS01291f5d60
*/*: bump PORTREVISION after switching to NumPy 2.x2bf3834a19
*/*: Switch to NumPy 2.x PR: 294328 Exp-run: antoineb0b4d9e1ea
math/py-numpy: switch all consumers to math/py-numpy1 ...and bump PORTREVISIONs of consumers with hard RUN_DEPENDS PR: 281470d4bd5ba72e
math/py-fastcluster: Update to 1.3.0 Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt60a3c23796
all: drop support for FreeBSD 13.2 which reached EOL today Thanks again to jbeich for noticing various things I overlooked. Reviewed by: acm, ashish, eduardo, ehaupt, eugen, jbeich, martymac, mat, nobukata, sunpoet, tagattie, yuri, arrowd, kde Differential Revision: https://reviews.freebsd.org/D4514119d68720f1
math/py-fastcluster: Convert to USE_PYTHON=pep517 - Bump PORTREVISION for package change5a910ffd72
all: remove explicit versions in USES=python for "3.x+"
The logic in USES=python will automatically convert this to 3.8+ by
itself.
Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.
finance/quickfix: mark BROKEN with PYTHON
libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++ -DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable -Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi -Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings -Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x -MT _quickfix_la-QuickfixPython.lo -MD -MP -MF .deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp -fPIC -DPIC -o .libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean '-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
^~~~~~~~~~
1 warning and 1 error generated.
Reviewed by: portmgr, vishwin, yuri
Differential Revision: <https://reviews.freebsd.org/D40568>3d9a815d9c*: Bump PORTREVISIONs for math/mpc update to 1.3.18d3e020ed0
math/py-fastcluster: Update WWW and clean up pkg-descref176396af
math/py-fastcluster: fix build on powerpc* with LLVM 14 by forcing 15 Assertion failed: ((CGF.CurFuncDecl == nullptr || CGF.Builder.getIsFPConstrained() || isa<CXXConstructorDecl>(CGF.CurFuncDecl) || isa<CXXDestructorDecl>(CGF.CurFuncDecl) || (NewExceptionBehavior == llvm::fp::ebIgnore && NewRoundingBehavior == llvm::RoundingMode::NearestTiesToEven)) && "FPConstrained should be enabled on entire function"), function ConstructorHelper, file /usr/local/poudriere/jails/main-powerpc64/usr/src/contrib/llvm-project/clang/lib/CodeGen/CodeGenFunction.cpp, line 163.278ced6f36
*/*: rename CHEESESHOP to PYPI in MASTER_SITES PR: 267994 Differential revision: D37518 Approved by: bapt77d68471ad
Remove WWW entries moved into port Makefiles Commit b7f05445c00f has added WWW entries to port Makefiles based on WWW: lines in pkg-descr files. This commit removes the WWW: lines of moved-over URLs from these pkg-descr files. Approved by: portmgr (tcberner)fb16dfecae
Add WWW entries to port Makefiles It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)b7f05445c0
math: remove 'Created by' lines A big Thank You to the original contributors of these ports: * Aaron Dalton <aaron@FreeBSD.org> * Aaron Dalton <aaron@daltons.ca> * Alessando Sagratini <ale_sagra@hotmail.com> * Alex Dupre <ale@FreeBSD.org> * Alexey Dokuchaev <danfe@FreeBSD.org> * Amarendra Godbole <amarendra.godbole@gmail.com> * Anders Nordby <anders@FreeBSD.org> * Andreas Fehlner (fehlner@gmx.de) * Andrew L. Neporada <andrew@chg.ru> * Andrey <gugu@zoo.rambler.ru> * Andrey Zakhvatov * Anton Berezin <tobez@FreeBSD.org> * Anton Berezin <tobez@plab.ku.dk> * Anton Berezin <tobez@tobez.org> * Anton Shterenlikht * Anton Shterenlikht <mexas@bris.ac.uk> * Bob Eager <bob@eager.cx> * Charlie Kester <corky1951@comcast.net> * Cheng-Lung Sung <clsung@FreeBSD.org> * Cheng-Lung Sung <clsung@dragon2.net> * Chris D. Faulhaber <jedgar@fxp.org> * Christopher J. Ruwe * Christopher Key <cjk32@cam.ac.uk> * Chuck Hein <geekdude@pacbell.net> * Cyrille Szymanski <cnszym@gmail.com> * Dan Rue <drue@therub.org> * Danilo Egea Gondolfo <danilo@FreeBSD.org> * David Naylor <dbn@FreeBSD.org> * David Naylor <naylor.b.david@gmail.com> * Dereckson <dereckson@gmail.com> * Devin Teske <dteske@FreeBSD.org> * Dmitry Sivachenko <demon@FreeBSD.org> * Dmitry Sivachenko <mitya@yandex-team.ru> * Don Croyle <croyle@gelemna.org> * Douglas K. Rand (rand@meridian-enviro.com) * Dylan Simon <dylan@dylex.net> * Edwin Groothuis <edwin@mavetju.org> * Eijiro Shibusawa <ej-sib@ice.uec.ac.jp> * Emanuel Haupt <ehaupt@FreeBSD.org> * Eoin Lawless (eoin@maths.tcd.ie) * Eric A. Griff <eagriff@global2000.net> * Eric van Gyzen <vangyzen@stat.duke.edu> * Ewgenij Gawrilow <gawrilow@math.tu-berlin.de> * Fernan Aguero <fernan@iib.unsam.edu.ar> * Foxfair Hu <foxfair@FreeBSD.org> * Frederic Han <han@math.jussieu.fr> * Gabor Kovesdan <gabor@FreeBSD.org> * Gea-Suan Lin <gslin@gslin.org> * George Reid <greid@ukug.uk.freebsd.org> * Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com> * Greg Larkin <glarkin@FreeBSD.org> * Guangyuan Yang <ygy@FreeBSD.org> * Gustau Perez i Querol <gustau.perez@gmail.com> * Heinz Tschabitscher * Horia Racoviceanu <horia@racoviceanu.com> * Hye-Shik Chang <perky@fallin.lv> * Iblis Lin <iblis@hs.ntnu.edu.tw> * Issei Suzuki <issei@jp.FreeBSD.ORG> * Janni * Jason Harris <jharris@widomaker.com> * Javad Kouhi <javad.kouhi@gmail.com> * Jean-Yves Lefort <jylefort@FreeBSD.org> * Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw> * Joe Marcus Clarke <marcus@FreeBSD.org> * Johannes Dieterich <dieterich@ogolem.org> * Johannes M Dieterich <jmd@FreeBSD.org> * Johannes Meixner <johannes@perceivon.net> * John Marino <marino@FreeBSD.org> * Joseph Koshy <jkoshy@FreeBSD.org> * Ju Pengfei <ju.pengfei@gmail.com> * Jukka A. Ukkonen <jau@iki.fi> * Kay Lehmann <kay_lehmann@web.de> * Kevin Lo <kevlo@FreeBSD.org> * Klaus T. Aehlig <aehlig@linta.de> * Kubilay Kocak <koobs@FreeBSD.org> * Kurt Jaeger <fbsd-ports@opsec.eu> * Lars Engels <lme@FreeBSD.org> * Lars Koeller <Lars.Koeller@Uni-Bielefeld.DE> * Lars Koeller <Lars.Koeller@Uni-Bielefeld.de> * Li-Wen Hsu <lwhsu@FreeBSD.org> * Li-Wen Hsu <lwhsu@lwhsu.org> * M. L. Dodson, <bdodson@scms.utmb.edu> * Maho Nakata <maho@FreeBSD.org> * Mario S F Ferreira <lioux@FreeBSD.org> * Mario S F Ferreira <lioux@linf.unb.br> et al. * Mario Sergio Fujikawa Ferreira <lioux@FreeBSD.org> * Mark Felder <feld@FreeBSD.org> * Mark R V Murray <markm@FreeBSD.org> * Martin Matuska <mm@FreeBSD.org> * Matthew Seaman <matthew@FreeBSD.org> * Maurice Castro <maurice@serc.rmit.edu.au> * Maxim Sobolev <sobomax@FreeBSD.org> * Maxime Henrion <mux@FreeBSD.org> * Michael Haro <mharo@FreeBSD.org> * Michael Johnson <ahze@FreeBSD.org> * Michael Johnson <ahze@ahze.net> * Michael Neumann <mneumann@ntecs.de> * Muhammad Moinur Rahmanh <5u623l20@gmail.com> * NAKATA Maho <chat95@mbox.kyoto-inet.or.jp> * NAKATA, Maho <maho@FreeBSD.org> * Nakata Maho <maho@FreeBSD.org> * Nicola Vitale <nivit@email.it> * Olivier Duchateau * Pedro F. Giffuni * Pedro F. Giffuni <giffunip@asme.org> * Pedro Giffuni * Pedro Giffuni <giffunip@asme.org> * Pedro Giffuni <pfg@FreeBSD.org> * Peter Pentchev <roam@FreeBSD.org> * Philip Paeps <philip@FreeBSD.org> * Pierre-Paul Lavoie <ppl@nbnet.nb.ca> * Pietro Cerutti <gahr@FreeBSD.org> * Piotr Rybicki <meritus@innervision.pl> * Po-Chuan Hsieh <sunpoet@FreeBSD.org> * Rainer Hurling <rhurlin@gwdg.de> * Robert Jenssen * Robin Schilham * Rod Taylor <ports@rbt.ca> * Roman Neuhauser <neuhauser@sigpipe.cz> * Sander Vesik <sander@haldjas.folklore.ee> * Scott Flatman <sf@dsinw.com> * Seamus Venasse <svenasse@polaris.ca> * Sergey A. Osokin <osa@FreeBSD.org> * Sergey Akifyev <asa@agava.com> * Sergey Akifyev <asa@gascom.ru> * Sergey Skvortsov <skv@FreeBSD.org> * Sergey Skvortsov <skv@protey.ru> * Shell Hung <shell@shellhung.org> * Shin-ya MURAKAMI <murashin@gfd-dennou.org> * Stas Timokhin <devel@stasyan.com> * Stefan A. Deutscher (sad@mailaps.org) * Stefan Esser <se@StefanEsser.FreeBSD.org> * Stephen Montgomery-Smith <stephen@FreeBSD.edu> * Stephen Montgomery-Smith <stephen@FreeBSD.org> * Stephen Montgomery-Smith <stephen@math.missouri.edu> * Stephen Montgomery-Smith <stephen@missouri.edu> * Steve Wills <steve@mouf.net> * Steve Wills <swills@FreeBSD.org> * Steven Kreuzer <skreuzer@FreeBSD.org> * Steven Kreuzer <skreuzer@f2o.org> * Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> * TAKATSU Tomonari <tota@FreeBSD.org> * Thierry Thomas (<thierry@pompo.net>) * Thierry Thomas <thierry@pompo.net> * Thomas Gellekum <tg@FreeBSD.org> * Thomas Sandford <freebsduser@paradisegreen.co.uk> * Timothy Bourke <timbob@bigpond.com> * Tony Maher * Tz-Huan Huang <tzhuan@csie.org> * Vsevolod Stakhov <vsevolod@FreeBSD.org> * Vsevolod Stakhov <vsevolod@highsecure.ru> * Waitman Gobble <waitman@waitman.net> * Wen Heping <wen@FreeBSD.org> * Wen Heping <wenheping@gmail.com> * Will Andrews <andrews@technologist.com> * Yi-Hsuan Hsin <mhsin@mhsin.org> * Ying-Chieh Liao <ijliao@FreeBSD.org> * Yinghong.Liu <relaxbsd@gmail.com> * Yoshiaki UCHIKAWA <yoshiaki@kt.rim.or.jp> * Yukihiro Nakai <Nakai@technologist.com> * Yuri Victorovich <yuri@FreeBSD.org> * Yuri Victorovich <yuri@rawbw.com> * Yuri Victorovich <yuri@tsoft.com> * Zhen REN <bg1tpt@gmail.com> * amir.husaini@gmail.com * arved * asami * b.f. <bf@FreeBSD.org> * bart <lbartoletti@FreeBSD.org> * bauerm * bf <bf2006a@yahoo.com> * bf <bf@FreeBSD.org> * bf@FreeBSD.org * bremner@unb.ca * chinsan * chuckr@FreeBSD.org * dawe <daweonline@gmail.com> * dbader@ece.unm.edu * dd * demon@FreeBSD.org * dikshie * eserte * fenner * gahr * giffunip * gmarco@giovannelli.it * gurkan@phys.ethz.ch * ijliao * janek@gaja.ipan.lublin.pl * jhs@berklix.com / asami (original) * jmz * js@jeannot.org * keith@FreeBSD.org * ljo * mr * nobu@rd.isac.co.jp * pauls@utdallas.edu * pusto@web.de * reg@shale.csir.co.za * rfarmer@predatorlabs.net * stephen@FreeBSD.org * thierry@pompo.net * tobez * will * # Created by Matthias Fechner <mfechner@FreeBSD.org> With hat: portmgrf53eb28489
math/py-fastcluster: Update to 1.2.6 Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt1256291848
math/py-fastcluster: Update USES=python math/py-numpy requires Python 3.7+3fc96aa60f
math/py-fastcluster: Update to 1.2.4 Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt165948b89e
math/py-fastcluster: Update to 1.2.3 Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt33c6b6a910
math/py-fastcluster: Remove PYNUMPY36c342df1d
Remove # $FreeBSD$ from Makefiles.305f148f48
Update to 1.1.28 Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt81479bf4dd
Update to 1.1.27 Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txtdb8d30dc60
Relax hardcoded paths to fix build with Python 3.8.7 Since r558913 Python 3.8 incorporates BPO-42604 [1] which changed the shared libs naming scheme. This means "EXT_SUFFIX" is now derived from SOABI and yields with Python 3.8 to ".cpython-38.so" instead of ".so". The affected ports strip the libaries in the "post-install" target via hardcoded path(s) and the build fails at the end because the new extension is not expected at this place. Remedy the issue by adding wildcards to these paths. This should also prepare the ports for future Python releases, which will use the new shared libs naming scheme. [1] https://bugs.python.org/issue42604 PR: 252057 Reported by: John Kennedy Reviewed by: fluffy, koobs Approved by: koobs (python)9cb5898561
scipy 1.5.4 is only compatible with python 3.6+ Reported by: pkg-fallout14be7bd191
Update to 1.1.26 Changes: https://github.com/dmuellner/fastcluster/releases https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt320f27e7a7
Bump PORTREVISION for ports depending on the canonical version of GCC as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330ea8c8ec7da
Bump PORTREVISION for ports depending on the canonical version of GCC defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, as a double check, everything INDEX-11 showed depending on lang/gcc7. PR: 231590a9f015d155
Use PY_FLAVOR for dependencies. FLAVOR is the current port's flavor, it should not be used outside of this scope. Sponsored by: Absolight4376dbbb58
Update to 1.1.25 Changes: https://github.com/dmuellner/fastcluster/blob/master/NEWS.txtc1c9d61caa
Switch all pypi.python.org WWWs to a new PyPi home pypi.org where they now redirect to anyway. All new urls checked to return 200, I've fixed a couple of them in the process. Approved by: portmgr blanket, matc637402081
Bump PORTREVISIONs of all users of math/mpc that we just updated to version 1.1.0 (via revision 464079).c2a92a1aea
Update to 1.1.24 - Update COMMENT - Add LICENSE_FILE - Add missing OPTIONS_DEFINE=DOCS - Strip shared library - Convert to options target helper - Add PyPI and GitHub repository to WWW - Take maintainership Changes: https://github.com/dmuellner/fastcluster https://github.com/dmuellner/fastcluster/blob/master/NEWS.txte94de26b97
Give xmj@'s ports back to the pool PR: 226157 Submitted by: xmj8e78ac8e67
Convert Python ports to FLAVORS.
Ports using USE_PYTHON=distutils are now flavored. They will
automatically get flavors (py27, py34, py35, py36) depending on what
versions they support.
There is also a USE_PYTHON=flavors for ports that do not use distutils
but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if
using distutils but flavors are not wanted.
A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
added to cope with Python ports that did not have the Python
PKGNAMEPREFIX but are flavored.
USES=python now also exports a PY_FLAVOR variable that contains the
current python flavor. It can be used in dependency lines when the
port itself is not python flavored. For example, deskutils/calibre.
By default, all the flavors are generated. To only generate flavors
for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define
BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf.
In all the ports with Python dependencies, the *_DEPENDS entries MUST
end with the flavor so that the framework knows which to build/use.
This is done by appending '@${PY_FLAVOR}' after the origin (or
@${FLAVOR} if in a Python module with Python flavors, as the content
will be the same). For example:
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}
PR: 223071
Reviewed by: portmgr, python
Sponsored by: Absolight
Differential Revision: https://reviews.freebsd.org/D12464551be3c723Update to 1.1.23 PR: 219354 Submitted by: xmj Approved by: xmj (maintainer)0d885880fe
- Update to 1.1.21 - Allow concurrent installs (fix docdir) PR: 212213 Submitted by: xmj@FreeBSD.org Approved by: maintainer timeout (johannes@perceivon.net, 6 weeks)1c96ea5d4a
Change all occurrences of xmj@chaot.net to johannes@perceivon.net as the owner requested. This only affects "Created by" lines with one exception: devel/uclcmd. There the maintainer is changed. This was overlooked in r416918. Approved by: junovitch (mentor)8b62234838
Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net PR: 210265 Submitted by: Johannes Jost Meixner (johannes@perceivon.net) Approved by: pi (mentor)c5152e00e5
Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org PR: 209746 Submitted by: xmjad67447870
- Update to 1.1.20 PR: 209623 Submitted by: xmj (maintainer)4c7c224dfb
Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.
With hat: portmgr
Sponsored by: Absolight8d6597e0bb- Convert ports of math/ to new USES=python Approved by: portmgr (implicit)214bd533a7
Update the default version of GCC in the Ports Collection from GCC 4.7.4 to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit)15945f8122
Update the default version of GCC used in the Ports Collection from GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk. Part II, Bump PORTREVISIONs. PR: 182136 Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports) Tested by: bdrewery (two -exp runs)1cd277bdce
math/py-fastcluster: Python functions for hierarchical clustering
Fastcluster provides Python functions for hierarchical clustering. It generates
hierarchical clusters from distance matrices or from vector data.
Part of this module is intended to replace the functions
linkage, single, complete, average, weighted, centroid, median, ward
in the module scipy.cluster.hierarchy with the same functionality but much
faster algorithms. Moreover, the function 'linkage_vector' provides
memory-efficient clustering for vector data.
The interface is very similar to MATLAB's Statistics Toolbox API to make code
easier to port from MATLAB to Python/Numpy. The core implementation of this
library is in C++ for efficiency.
WWW: http://danifold.net/fastcluster.html
PR: ports/184931
Submitted by: Johannes Jost Meixner <xmj chaot.net>6afaa267f3