math/py-mathics9.0.0_6

math/py-mathics: Fix with mpmath 1.4 and llvmlite 0.45+

- mathics/core/atoms.py annotates Number.to_mpmath with
  mpmath.ctx_mp_python.mpf, which mpmath 1.4 renamed, so
  mathics.core.atoms and most builtins fail to import. Use the public
  mpmath.mpf.
- mathics/compile/compile.py calls llvmlite.binding.initialize(),
  which raises RuntimeError since llvmlite 0.45 (initialization is
  automatic), breaking Compile and every builtin module that imports
  it (calculus, plot, ...). Drop the call, as upstream 10.0 did.

While here, follow the Python Ports Policy, fix portlint warnings and
document the patches.

PR:		299971
MFC after:	5 days

*/*: bump PORTREVISION after switching to NumPy 2.x

*/*: Switch to NumPy 2.x

PR:		294328
Exp-run:	antoine

python.mk: retire ${PYNUMPY}

With both math/py-numpy (2) and math/py-numpy1, the variable stopped
making sense. Also remove the upper version bound.

math/py-numpy: switch all consumers to math/py-numpy1

...and bump PORTREVISIONs of consumers with hard RUN_DEPENDS

PR: 281470

Mk/Uses/python.mk: Remove USE_PYTHON=cython3{,_run,_test}

- Convert all cython3 occurrence to USE_PYTHON=cython*
- Bump PORTREVISION dependent ports of USE_PYTHON=cython_run for dependency change

PR:		291778

security/libsodium: Update to 1.0.21

The API remains compatible but bumping all dependent ports as SHLIB
has changed.

Changelog: https://github.com/jedisct1/libsodium/releases/tag/1.0.21-RELEASE
Security: https://00f.net/2025/12/30/libsodium-vulnerability/
PR: 279347

math/py-mathics: switch to Cython 3

*/*: switch dependency from devel/py-lxml5 to devel/py-lxml

Currently, there are two versions of python XML processing library
which conflict each other in the ports tree, namely:
- devel/py-lxml5 (now at version 5.4.0)
- devel/py-lxml  (now at version 6.0.1)

To avoid the situation that some ports depend on py-lxml5 and some
others do on py-lxml (by switching dependencies individually), this
commit switches the dependencies from py-lxml5 to py-lxml at once.

Additional note: There are still two ports (textproc/py-rdflib and
www/py-draftjs-exporter) depending on py-lxml5 since they limit upper
version to less than 6.

PR:		289491
Approved by:	Michiel van Baak Jansen <michiel@vanbaak.eu>, arrowd,
		crees, madpilot, delphij, marcus, nivit, kai,
		skreuzer, fluffy, bofh, thierry, stephen, sunpoet,
		0mp, Eric Camachat <eric@camachat.org>

math/py-mathics: upgrade to 9.0.0

Release notes at https://github.com/Mathics3/mathics-core/releases/tag/9.0.0

all: bump PORTREVISION after updating graphics/libyuv

Using the Tools/scripts/bump_revision.pl script

*/*: update dependency on devel/py-lxml to devel/py-lxml5

www/py-beautifulsoup has switched dependency on devel/py-lxml to
devel/py-lxml5.

Ports which directly or indirectly depends on both
www/py-beautifulsoup and devel/py-lxml must also switch their
dependencies on devel/py-lxml to devel/py-lxml5 to avoid conflicts.

PR:		288047
Approved by:	portmgr (chase dependency change)

python.mk: rename PYTHON_EXT_SUFFIX to PYTHON_TAG, document, etc

EXT_SUFFIX, according to PEP 3149, refers to the full tag and
extension for compiled extension module objects, eg .cpython-311.so,
.cpython-313t.so, etc. We do not use the correct semantic meaning,
and this usage becomes ambiguous and confusing when tags do not
match between bytecode and compiled extension module objects.

Rename our PYTHON_EXT_SUFFIX to PYTHON_TAG to align with PEP 3147's
specification of a magic tag, which consists of implementation name
and shorthand version only. This is meant for bytecode and other
files containing this tag in their filename that do not depend on
a specific Python ABI for the same version. Chase all existing
consumers.

Introduce PYTHON_SOABI to align with PEP 3149's specification of a
tag, which consists of implementation name, shorthand version and
any ABI flags present (this and PYTHON_TAG are identical without
ABI flags). This is meant for compiled extension module objects and
other files that depend on a specific Python ABI for the same
version.

Add documentation for these variables that our PYTHON_EXT_SUFFIX
never had.

PR: 274671
Event: Kitchener-Waterloo Hackathon 202506

math/py-mathics: upgrade to 8.0.1

Release notes at https://github.com/Mathics3/mathics-core/releases/tag/8.0.1

*/*: Fix mathics PKGNAME

These show up with Poudriere's non-default BAD_PKGNAME_DEPS_ARE_FATAL=yes

python: bump all USE_PYTHON=distutils consumers after RUN_DEPENDS removal

Any missed ports, feel free to bump.

Any ports that need setuptools at runtime can have the devel/py-setuptools
manually added back to RUN_DEPENDS, but understand that this practice
is deprecated; see CHANGES for details.

math/py-mathics: upgrade to 8.0.0

Releases notes at https://github.com/Mathics3/mathics-core/releases

math/py-mathics: Use USE_PYTHON=cython_run

- Remove duplicate BUILD_DEPENDS

Approved by:	portmgr (blanket)
With hat:	python

math/py-mathics: chase the upgrade of numpy

security/libsodium: update to 1.0.19, bump dependent ports

PR:	278259
Reported by:	Andrey Korobkov <alster-vinterdalen.se>

devel/py-python-dateutil: Move devel/py-dateutil to devel/py-python-dateutil

- Convert to USE_PYTHON=pep517
- Bump PORTREVISION of dependent ports for dependency change
- While I'm here, update audio/py-pyradio to use PYTHON_PKGNAMEPREFIX instead of PKGNAMEPREFIX for *_DEPENDS

math/py-mathics: upgrade to 6.0.4

Release notes at <https://github.com/Mathics3/mathics-core/releases/tag/6.0.4>.

math/py-mathics: upgrade to 6.0.3

Release notes at <https://github.com/Mathics3/mathics-core/releases/tag/6.0.3>.

math/py-mathics: upgrade to 6.0.2

all: remove explicit versions in USES=python for "3.x+"

The logic in USES=python will automatically convert this to 3.8+ by
itself.

Adjust two ports that only had Python 3.7 mentioned but build fine
on Python 3.8 too.

finance/quickfix: mark BROKEN with PYTHON

libtool: compile:  c++ -DHAVE_CONFIG_H -I. -I../.. -I -I. -I.. -I../.. -I../C++ -DLIBICONV_PLUG -DPYTHON_MAJOR_VERSION=3 -Wno-unused-variable -Wno-maybe-uninitialized -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -fno-strict-aliasing -DLIBICONV_PLUG -Wall -ansi -Wno-unused-command-line-argument -Wpointer-arith -Wwrite-strings -Wno-overloaded-virtual -Wno-deprecated-declarations -Wno-deprecated -std=c++0x -MT _quickfix_la-QuickfixPython.lo -MD -MP -MF .deps/_quickfix_la-QuickfixPython.Tpo -c QuickfixPython.cpp  -fPIC -DPIC -o .libs/_quickfix_la-QuickfixPython.o
warning: unknown warning option '-Wno-maybe-uninitialized'; did you mean '-Wno-uninitialized'? [-Wunknown-warning-option]
QuickfixPython.cpp:175:11: fatal error: 'Python.h' file not found
          ^~~~~~~~~~
1 warning and 1 error generated.

Reviewed by:	portmgr, vishwin, yuri
Differential Revision:	<https://reviews.freebsd.org/D40568>

audio/opus: bump consumers after update to 1.4

*: Bump PORTREVISIONs for math/mpc update to 1.3.1

math/py-mathics: upgrade to 6.0.1

Release notes at
	<https://github.com/Mathics3/mathics-core/releases/tag/6.0.1>.

math/py-mathics: allow to run with sympy-1.11.1

*/*: rename CHEESESHOP to PYPI in MASTER_SITES

PR:			267994
Differential revision:	D37518
Approved by:		bapt

devel/py-ipykernel5: Remove in favor of devel/py-ipykernel

Ports were switched to devel/py-ipykernel5 on 2020-05-07
because devel/py-ipykernel has expired at the time.

Currently main consumers of devel/py-ipykernel - Jupyter and
Spyder - work fine with devel/py-ipykernel.

There is no reason to use an outdated devel/py-ipykernel5 everywhere.

Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)

Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)

*/*: bump all consumers after recent boost upgrade

math/py-mathics: upgrade to 5.0.2

Releases notes at <https://github.com/Mathics3/mathics-core/releases>.

math: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Aaron Dalton <aaron@FreeBSD.org>
  *  Aaron Dalton <aaron@daltons.ca>
  *  Alessando Sagratini <ale_sagra@hotmail.com>
  *  Alex Dupre <ale@FreeBSD.org>
  *  Alexey Dokuchaev <danfe@FreeBSD.org>
  *  Amarendra Godbole <amarendra.godbole@gmail.com>
  *  Anders Nordby <anders@FreeBSD.org>
  *  Andreas Fehlner (fehlner@gmx.de)
  *  Andrew L. Neporada <andrew@chg.ru>
  *  Andrey <gugu@zoo.rambler.ru>
  *  Andrey Zakhvatov
  *  Anton Berezin <tobez@FreeBSD.org>
  *  Anton Berezin <tobez@plab.ku.dk>
  *  Anton Berezin <tobez@tobez.org>
  *  Anton Shterenlikht
  *  Anton Shterenlikht <mexas@bris.ac.uk>
  *  Bob Eager <bob@eager.cx>
  *  Charlie Kester <corky1951@comcast.net>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Cheng-Lung Sung <clsung@dragon2.net>
  *  Chris D. Faulhaber <jedgar@fxp.org>
  *  Christopher J. Ruwe
  *  Christopher Key <cjk32@cam.ac.uk>
  *  Chuck Hein <geekdude@pacbell.net>
  *  Cyrille Szymanski <cnszym@gmail.com>
  *  Dan Rue <drue@therub.org>
  *  Danilo Egea Gondolfo <danilo@FreeBSD.org>
  *  David Naylor <dbn@FreeBSD.org>
  *  David Naylor <naylor.b.david@gmail.com>
  *  Dereckson <dereckson@gmail.com>
  *  Devin Teske <dteske@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Dmitry Sivachenko <mitya@yandex-team.ru>
  *  Don Croyle <croyle@gelemna.org>
  *  Douglas K. Rand (rand@meridian-enviro.com)
  *  Dylan Simon <dylan@dylex.net>
  *  Edwin Groothuis <edwin@mavetju.org>
  *  Eijiro Shibusawa <ej-sib@ice.uec.ac.jp>
  *  Emanuel Haupt <ehaupt@FreeBSD.org>
  *  Eoin Lawless (eoin@maths.tcd.ie)
  *  Eric A. Griff <eagriff@global2000.net>
  *  Eric van Gyzen <vangyzen@stat.duke.edu>
  *  Ewgenij Gawrilow <gawrilow@math.tu-berlin.de>
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Foxfair Hu <foxfair@FreeBSD.org>
  *  Frederic Han <han@math.jussieu.fr>
  *  Gabor Kovesdan <gabor@FreeBSD.org>
  *  Gea-Suan Lin <gslin@gslin.org>
  *  George Reid <greid@ukug.uk.freebsd.org>
  *  Giuseppe Pilichi aka Jacula Modyun <jacula@gmail.com>
  *  Greg Larkin <glarkin@FreeBSD.org>
  *  Guangyuan Yang <ygy@FreeBSD.org>
  *  Gustau Perez i Querol <gustau.perez@gmail.com>
  *  Heinz Tschabitscher
  *  Horia Racoviceanu <horia@racoviceanu.com>
  *  Hye-Shik Chang <perky@fallin.lv>
  *  Iblis Lin <iblis@hs.ntnu.edu.tw>
  *  Issei Suzuki <issei@jp.FreeBSD.ORG>
  *  Janni
  *  Jason Harris <jharris@widomaker.com>
  *  Javad Kouhi <javad.kouhi@gmail.com>
  *  Jean-Yves Lefort <jylefort@FreeBSD.org>
  *  Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
  *  Joe Marcus Clarke <marcus@FreeBSD.org>
  *  Johannes Dieterich <dieterich@ogolem.org>
  *  Johannes M Dieterich <jmd@FreeBSD.org>
  *  Johannes Meixner <johannes@perceivon.net>
  *  John Marino <marino@FreeBSD.org>
  *  Joseph Koshy <jkoshy@FreeBSD.org>
  *  Ju Pengfei <ju.pengfei@gmail.com>
  *  Jukka A. Ukkonen <jau@iki.fi>
  *  Kay Lehmann <kay_lehmann@web.de>
  *  Kevin Lo <kevlo@FreeBSD.org>
  *  Klaus T. Aehlig <aehlig@linta.de>
  *  Kubilay Kocak <koobs@FreeBSD.org>
  *  Kurt Jaeger <fbsd-ports@opsec.eu>
  *  Lars Engels <lme@FreeBSD.org>
  *  Lars Koeller <Lars.Koeller@Uni-Bielefeld.DE>
  *  Lars Koeller <Lars.Koeller@Uni-Bielefeld.de>
  *  Li-Wen Hsu <lwhsu@FreeBSD.org>
  *  Li-Wen Hsu <lwhsu@lwhsu.org>
  *  M. L. Dodson, <bdodson@scms.utmb.edu>
  *  Maho Nakata <maho@FreeBSD.org>
  *  Mario S F Ferreira <lioux@FreeBSD.org>
  *  Mario S F Ferreira <lioux@linf.unb.br> et al.
  *  Mario Sergio Fujikawa Ferreira <lioux@FreeBSD.org>
  *  Mark Felder <feld@FreeBSD.org>
  *  Mark R V Murray <markm@FreeBSD.org>
  *  Martin Matuska <mm@FreeBSD.org>
  *  Matthew Seaman <matthew@FreeBSD.org>
  *  Maurice Castro <maurice@serc.rmit.edu.au>
  *  Maxim Sobolev <sobomax@FreeBSD.org>
  *  Maxime Henrion <mux@FreeBSD.org>
  *  Michael Haro <mharo@FreeBSD.org>
  *  Michael Johnson <ahze@FreeBSD.org>
  *  Michael Johnson <ahze@ahze.net>
  *  Michael Neumann <mneumann@ntecs.de>
  *  Muhammad Moinur Rahmanh <5u623l20@gmail.com>
  *  NAKATA Maho <chat95@mbox.kyoto-inet.or.jp>
  *  NAKATA, Maho <maho@FreeBSD.org>
  *  Nakata Maho <maho@FreeBSD.org>
  *  Nicola Vitale <nivit@email.it>
  *  Olivier Duchateau
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni <giffunip@asme.org>
  *  Pedro Giffuni
  *  Pedro Giffuni <giffunip@asme.org>
  *  Pedro Giffuni <pfg@FreeBSD.org>
  *  Peter Pentchev <roam@FreeBSD.org>
  *  Philip Paeps <philip@FreeBSD.org>
  *  Pierre-Paul Lavoie <ppl@nbnet.nb.ca>
  *  Pietro Cerutti <gahr@FreeBSD.org>
  *  Piotr Rybicki <meritus@innervision.pl>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Rainer Hurling <rhurlin@gwdg.de>
  *  Robert Jenssen
  *  Robin Schilham
  *  Rod Taylor <ports@rbt.ca>
  *  Roman Neuhauser <neuhauser@sigpipe.cz>
  *  Sander Vesik <sander@haldjas.folklore.ee>
  *  Scott Flatman <sf@dsinw.com>
  *  Seamus Venasse <svenasse@polaris.ca>
  *  Sergey A. Osokin <osa@FreeBSD.org>
  *  Sergey Akifyev <asa@agava.com>
  *  Sergey Akifyev <asa@gascom.ru>
  *  Sergey Skvortsov <skv@FreeBSD.org>
  *  Sergey Skvortsov <skv@protey.ru>
  *  Shell Hung <shell@shellhung.org>
  *  Shin-ya MURAKAMI <murashin@gfd-dennou.org>
  *  Stas Timokhin <devel@stasyan.com>
  *  Stefan A. Deutscher (sad@mailaps.org)
  *  Stefan Esser <se@StefanEsser.FreeBSD.org>
  *  Stephen Montgomery-Smith <stephen@FreeBSD.edu>
  *  Stephen Montgomery-Smith <stephen@FreeBSD.org>
  *  Stephen Montgomery-Smith <stephen@math.missouri.edu>
  *  Stephen Montgomery-Smith <stephen@missouri.edu>
  *  Steve Wills <steve@mouf.net>
  *  Steve Wills <swills@FreeBSD.org>
  *  Steven Kreuzer <skreuzer@FreeBSD.org>
  *  Steven Kreuzer <skreuzer@f2o.org>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  TAKATSU Tomonari <tota@FreeBSD.org>
  *  Thierry Thomas (<thierry@pompo.net>)
  *  Thierry Thomas <thierry@pompo.net>
  *  Thomas Gellekum <tg@FreeBSD.org>
  *  Thomas Sandford <freebsduser@paradisegreen.co.uk>
  *  Timothy Bourke <timbob@bigpond.com>
  *  Tony Maher
  *  Tz-Huan Huang <tzhuan@csie.org>
  *  Vsevolod Stakhov <vsevolod@FreeBSD.org>
  *  Vsevolod Stakhov <vsevolod@highsecure.ru>
  *  Waitman Gobble <waitman@waitman.net>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Will Andrews <andrews@technologist.com>
  *  Yi-Hsuan Hsin <mhsin@mhsin.org>
  *  Ying-Chieh Liao <ijliao@FreeBSD.org>
  *  Yinghong.Liu <relaxbsd@gmail.com>
  *  Yoshiaki UCHIKAWA <yoshiaki@kt.rim.or.jp>
  *  Yukihiro Nakai <Nakai@technologist.com>
  *  Yuri Victorovich <yuri@FreeBSD.org>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  Yuri Victorovich <yuri@tsoft.com>
  *  Zhen REN <bg1tpt@gmail.com>
  *  amir.husaini@gmail.com
  *  arved
  *  asami
  *  b.f. <bf@FreeBSD.org>
  *  bart <lbartoletti@FreeBSD.org>
  *  bauerm
  *  bf <bf2006a@yahoo.com>
  *  bf <bf@FreeBSD.org>
  *  bf@FreeBSD.org
  *  bremner@unb.ca
  *  chinsan
  *  chuckr@FreeBSD.org
  *  dawe <daweonline@gmail.com>
  *  dbader@ece.unm.edu
  *  dd
  *  demon@FreeBSD.org
  *  dikshie
  *  eserte
  *  fenner
  *  gahr
  *  giffunip
  *  gmarco@giovannelli.it
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  janek@gaja.ipan.lublin.pl
  *  jhs@berklix.com / asami (original)
  *  jmz
  *  js@jeannot.org
  *  keith@FreeBSD.org
  *  ljo
  *  mr
  *  nobu@rd.isac.co.jp
  *  pauls@utdallas.edu
  *  pusto@web.de
  *  reg@shale.csir.co.za
  *  rfarmer@predatorlabs.net
  *  stephen@FreeBSD.org
  *  thierry@pompo.net
  *  tobez
  *  will
  * # Created by Matthias Fechner <mfechner@FreeBSD.org>

With hat:	portmgr

math/py-mathics: unbreak

math/py-mathics: chase textproc/py-wordcloud

+ minor fixes.

devel/py-pint: Update to 0.19.1

- Update USES=python of dependent ports

Changes:	https://github.com/hgrecco/pint/blob/master/CHANGES

math/py-mathics: remove bogus sympy max version limitation

This fixes this and dependent ports, including math/mathicsscript,
which is confirmed by `make test`

Approved by:	portmgr blanket

math/py-mathics: upgrade to 4.0.0

math/py-mathics: upgrade to 2.2.0

Release notes at
<https://github.com/mathics/Mathics/releases/tag/2.2.0>.

math/py-matplotlib: chase minimum Python version in dependent ports

Since the previous update changed USES=python from 3.6+ to 3.7+, all
dependent ports must have USES=python:3.7+ as well, otherwise it breaks
the @py36 flavor.

PR:		255347
Reported by:	sunpoet

math/py-mathics: Fix packaging with Python 3.8+

PR:		253815
Approved by:	python (with hat)

math/py-mathics: upgrade to 2.1.0

- Switch to CHEESESHOP, to keep all modules coherent

- Release notes at <https://github.com/mathics/Mathics/releases/tag/2.1.0>.

Remove # $FreeBSD$ from Makefiles.

- Upgrade to 2.0.0. - Release notes at <https://github.com/mathics/Mathics/releases/tag/2.0.0>.

Upgrade to 1.1.1 - Christmas 2020 - what a year!

Release notes at <https://github.com/mathics/Mathics/releases/tag/1.1.1>.

Adding Mathics, a general-purpose computer algebra system (CAS).