CVE and update status of the FreeBSD ports tree4,826 unaddressed CVEs in 618 portsAll times are CET

Port details

science/hdf5-1101.10.11

Hierarchical Data Format library (from NCSA) 1.10.x

Maintainer
sunpoet@FreeBSD.org
Packages
hdf5-110 1.10.11
Upstream
up to date
CPE
hdfgroup:hdf5 from the port
WWW
https://www.hdfgroup.org/
Links
cgit · VuXML

Unaddressed (20) · The CVE record lists this version as affected, no VuXML entry names the CVE

CVE-2024-326089.8published 2024-10-09

HDF5 library through 1.14.3 has memory corruption in H5A__close resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2026-347347.8published 2026-04-09

HDF5 is software for managing data. In 1.14.1-2 and earlier, a heap-use-after-free was found in the h5dump helper utility. An attacker who can supply a malicious h5 file can trigger a heap use-after-free. The freed object is referenced in a memmove call from H5T__conv_struct. The original object was allocated by H5D__typeinfo_init_phase3 and freed by H5D__t…

CVE-2026-262007.8published 2026-02-19

HDF5 is software for managing data. Prior to version 1.14.4-2, an attacker who can control an `h5` file parsed by HDF5 can trigger a write-based heap buffer overflow condition. This can lead to a denial-of-service condition, and potentially further issues such as remote code execution depending on the practical exploitability of the heap overflow against mo…

CVE-2026-261975.9published 2026-07-20

HDF5 is a high-performance library and a file format specification that implements the HDF5 data model. If a file is corrupted such that an array datatype's size, the number of elements, and the element size are not in agreement it can trigger an out of bounds read. The array datatype stores the full size of the datatype (`dt->shared->size`) separately fro…

CVE-2026-261995.9published 2026-07-20

HDF5 is a high-performance library and a file format specification that implements the HDF5 data model. If `H5Iget_name` is invoked on a group id with `0` for the size parameter, it will underflow when trying to place a null terminator in the buffer. This can occur if `H5Iget_name` is invoked in a way where `size` can be forced to zero, and there is importa…

CVE-2026-175725.5published 2026-07-27

Heap-based buffer overflow in the SOHM list-index deserialization code in HDF5 through 2.1.1 on all platforms allows attackers to cause a denial of service (crash) via a crafted HDF5 file whose shared-message list index declares a num_messages count exceeding list_max, triggering out-of-bounds heap reads and writes in H5SM__cache_list_deserialize and H5SM__…

CVE-2026-290435.5published 2026-04-10

HDF5 is software for managing data. In 1.14.1-2 and earlier, an attacker who can control an h5 file parsed by HDF5 can trigger a write-based heap buffer overflow condition in the H5T__ref_mem_setnull method. This can lead to a denial-of-service condition, and potentially further issues such as remote code execution depending on the practical exploitability …

CVE-2026-175745.2published 2026-07-27

HDF5 contains a NULL pointer dereference vulnerability. Processing a crafted HDF5 file containing an attribute with an invalid variable-length datatype type field may cause the application to crash when the attribute is read.

CVE-2026-175734.0published 2026-07-27

A double free vulnerability was discovered in the HDF5 library. Processing a crafted HDF5 file containing an oversized chunk size field via h5repack may cause the application to abort due to a double free.

CVE-2025-65161.9published 2025-06-23

A vulnerability has been found in HDF5 up to 1.14.6 and classified as critical. This vulnerability affects the function H5F_addr_decode_len of the file /hdf5/src/H5Fint.c. The manipulation leads to heap-based buffer overflow. An attack has to be approached locally. The exploit has been disclosed to the public and may be used.

CVE-2025-62701.9published 2025-06-19

A vulnerability, which was classified as critical, has been found in HDF5 up to 1.14.6. Affected by this issue is the function H5FS__sect_find_node of the file H5FSsection.c. The manipulation leads to heap-based buffer overflow. It is possible to launch the attack on the local host. The exploit has been disclosed to the public and may be used.

CVE-2025-62691.9published 2025-06-19

A vulnerability classified as critical was found in HDF5 up to 1.14.6. Affected by this vulnerability is the function H5C__reconstruct_cache_entry of the file H5Cimage.c. The manipulation leads to heap-based buffer overflow. Attacking locally is a requirement. The exploit has been disclosed to the public and may be used.

CVE-2025-29241.9published 2025-03-28

A vulnerability, which was classified as problematic, was found in HDF5 up to 1.14.6. This affects the function H5HL__fl_deserialize of the file src/H5HLcache.c. The manipulation of the argument free_block leads to heap-based buffer overflow. It is possible to launch the attack on the local host. The exploit has been disclosed to the public and may be used.

CVE-2025-29251.9published 2025-03-28

A vulnerability has been found in HDF5 up to 1.14.6 and classified as problematic. This vulnerability affects the function H5MM_realloc of the file src/H5MM.c. The manipulation of the argument mem leads to double free. The attack needs to be approached locally. The exploit has been disclosed to the public and may be used.

CVE-2025-29261.9published 2025-03-28

A vulnerability was found in HDF5 up to 1.14.6 and classified as problematic. This issue affects the function H5O__cache_chk_serialize of the file src/H5Ocache.c. The manipulation leads to null pointer dereference. An attack has to be approached locally. The exploit has been disclosed to the public and may be used.

CVE-2025-29231.9published 2025-03-28

A vulnerability, which was classified as problematic, has been found in HDF5 up to 1.14.6. Affected by this issue is the function H5F_addr_encode_len of the file src/H5Fint.c. The manipulation of the argument pp leads to heap-based buffer overflow. Attacking locally is a requirement. The exploit has been disclosed to the public and may be used.

CVE-2025-29131.9published 2025-03-28

A vulnerability was found in HDF5 up to 1.14.6. It has been rated as critical. Affected by this issue is the function H5FL__blk_gc_list of the file src/H5FL.c. The manipulation of the argument H5FL_blk_head_t leads to use after free. An attack has to be approached locally. The exploit has been disclosed to the public and may be used.

CVE-2025-29141.9published 2025-03-28

A vulnerability classified as problematic has been found in HDF5 up to 1.14.6. This affects the function H5FS__sinfo_Srialize_Sct_cb of the file src/H5FScache.c. The manipulation of the argument sect leads to heap-based buffer overflow. Local access is required to approach this attack. The exploit has been disclosed to the public and may be used.

CVE-2025-29151.9published 2025-03-28

A vulnerability classified as problematic was found in HDF5 up to 1.14.6. This vulnerability affects the function H5F__accum_free of the file src/H5Faccum.c. The manipulation of the argument overlap_size leads to heap-based buffer overflow. Attacking locally is a requirement. The exploit has been disclosed to the public and may be used.

CVE-2025-29121.9published 2025-03-28

A vulnerability was found in HDF5 up to 1.14.6. It has been declared as problematic. Affected by this vulnerability is the function H5O_msg_flush of the file src/H5Omessage.c. The manipulation of the argument oh leads to heap-based buffer overflow. The attack needs to be approached locally. The exploit has been disclosed to the public and may be used.

VuXML only (0) · listed, port not fixed yet

None. pkg audit reports nothing for this version.

Possibly backported (38) · The CVE record gives a range ending in a newer branch, check the branch changelog

This port tracks an older, still maintained branch. The CVE record only says “before X” with X in a newer branch, so it cannot tell whether this branch received the fix. This is an estimate, not a confirmation. These CVEs are not counted as unaddressed.
CVE-2024-338749.8published 2024-05-14

HDF5 Library through 1.14.3 has a heap buffer overflow in H5O__mtime_new_encode in H5Omtime.c.

CVE-2024-326219.8published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5HG_read in H5HG.c (called from H5VL__native_blob_get in H5VLnative_blob.c), resulting in the corruption of the instruction pointer.

CVE-2024-326159.8published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5Z__nbit_decompress_one_byte in H5Znbit.c, caused by the earlier use of an initialized pointer.

CVE-2024-326119.8published 2024-05-14

HDF5 Library through 1.14.3 may use an uninitialized value in H5A__attr_release_table in H5Aint.c.

CVE-2024-291649.8published 2024-05-14

HDF5 through 1.14.3 contains a stack buffer overflow in H5R__decode_heap, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291599.8published 2024-05-14

HDF5 through 1.14.3 contains a buffer overflow in H5Z__filter_scaleoffset, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291579.8published 2024-05-14

HDF5 through 1.14.3 contains a heap buffer overflow in H5HG_read, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-326229.1published 2024-05-14

HDF5 Library through 1.14.3 contains a out-of-bounds read operation in H5FL_arr_malloc in H5FL.c (called from H5S_set_extent_simple in H5S.c).

CVE-2024-338778.8published 2024-05-14

HDF5 Library through 1.14.3 has a heap-based buffer overflow in H5T__conv_struct_opt in H5Tconv.c.

CVE-2024-338738.8published 2024-05-14

HDF5 Library through 1.14.3 has a heap-based buffer overflow in H5D__scatter_mem in H5Dscatgath.c.

CVE-2024-326238.8published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5VM_array_fill in H5VM.c (called from H5S_select_elements in H5Spoint.c).

CVE-2024-326148.8published 2024-05-14

HDF5 Library through 1.14.3 has a SEGV in H5VM_memcpyvv in H5VM.c.

CVE-2024-326178.8published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read caused by the unsafe use of strdup in H5MM_xstrdup in H5MM.c (called from H5G__ent_to_link in H5Glink.c).

CVE-2024-326058.8published 2024-05-14

HDF5 Library through 1.14.3 has a heap-based buffer over-read in H5VM_memcpyvv in H5VM.c (called from H5D__compact_readvv in H5Dcompact.c).

CVE-2024-291618.8published 2024-05-14

HDF5 through 1.14.3 contains a heap buffer overflow in H5A__attr_release_table, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-326097.5published 2024-05-14

HDF5 Library through 1.14.3 allows stack consumption in the function H5E_printf_stack in H5Eint.c.

CVE-2024-326247.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5T__ref_mem_setnull in H5Tref.c (called from H5T__conv_ref in H5Tconv.c), resulting in the corruption of the instruction pointer.

CVE-2024-326197.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5T_copy_reopen in H5T.c, resulting in the corruption of the instruction pointer.

CVE-2024-326207.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read in H5F_addr_decode_len in H5Fint.c, resulting in the corruption of the instruction pointer.

CVE-2024-326187.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5T__get_native_type in H5Tnative.c, resulting in the corruption of the instruction pointer.

CVE-2024-326127.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read in H5HL__fl_deserialize in H5HLcache.c, resulting in the corruption of the instruction pointer, a different vulnerability than CVE-2024-32613.

CVE-2024-326137.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read in the function H5HL__fl_deserialize in H5HLcache.c, a different vulnerability than CVE-2024-32612.

CVE-2024-326167.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read in H5O__dtype_encode_helper in H5Odtype.c.

CVE-2024-291657.4published 2024-05-14

HDF5 through 1.14.3 contains a buffer overflow in H5Z__filter_fletcher32, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291637.4published 2024-05-14

HDF5 through 1.14.3 contains a heap buffer overflow in H5T__bit_find, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291607.4published 2024-05-14

HDF5 through 1.14.3 contains a heap buffer overflow in H5HG__cache_heap_deserialize, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291627.4published 2024-05-14

HDF5 through 1.13.3 and/or 1.14.2 contains a stack buffer overflow in H5HG_read, resulting in denial of service or potential code execution.

CVE-2024-291587.4published 2024-05-14

HDF5 through 1.14.3 contains a stack buffer overflow in H5FL_arr_malloc, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-338755.7published 2024-05-14

HDF5 Library through 1.14.3 has a heap-based buffer overflow in H5O__layout_encode in H5Olayout.c, resulting in the corruption of the instruction pointer.

CVE-2024-338765.7published 2024-05-14

HDF5 Library through 1.14.3 has a heap buffer overflow in H5S__point_deserialize in H5Spoint.c.

CVE-2024-326105.7published 2024-05-14

HDF5 Library through 1.14.3 has a SEGV in H5T_close_real in H5T.c, resulting in a corrupted instruction pointer.

CVE-2024-326075.7published 2024-05-14

HDF5 Library through 1.14.3 has a SEGV in H5A__close in H5Aint.c, resulting in the corruption of the instruction pointer.

CVE-2024-326065.7published 2024-05-14

HDF5 Library through 1.14.3 may attempt to dereference uninitialized values in h5tools_str_sprint in tools/lib/h5tools_str.c (called from h5tools_dump_simple_data in tools/lib/h5tools_dump.c).

CVE-2024-291665.7published 2024-05-14

HDF5 through 1.14.3 contains a buffer overflow in H5O__linfo_decode, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2020-108125.5published 2020-03-22

An issue was discovered in HDF5 through 1.12.0. A NULL pointer dereference exists in the function H5F_get_nrefs() located in H5Fquery.c. It allows an attacker to cause Denial of Service.

CVE-2020-108115.5published 2020-03-22

An issue was discovered in HDF5 through 1.12.0. A heap-based buffer over-read exists in the function H5O__layout_decode() located in H5Olayout.c. It allows an attacker to cause Denial of Service.

CVE-2020-108105.5published 2020-03-22

An issue was discovered in HDF5 through 1.12.0. A NULL pointer dereference exists in the function H5AC_unpin_entry() located in H5AC.c. It allows an attacker to cause Denial of Service.

CVE-2020-108095.5published 2020-03-22

An issue was discovered in HDF5 through 1.12.0. A heap-based buffer overflow exists in the function Decompress() located in decompress.c. It can be triggered by sending a crafted file to the gif2h5 binary. It allows an attacker to cause Denial of Service.

Fixed (0)

No VuXML entries for this package.

Commits (6)

Po-Chuan Hsieh (sunpoet) · 1.10.11
science/hdf5-110: Update to 1.10.11

- Simplify Makefile
- Fix PLIST: fix conditional entries

PR:		279183
Changes:	https://github.com/HDFGroup/hdf5/releases
		https://www.hdfgroup.org/tag/hdf5-release/
		https://www.hdfgroup.org/2023/09/release-of-hdf5-1-10-11-library-and-tools-newsletter-198/
ffca62c760
Po-Chuan Hsieh (sunpoet) · 1.10.10
science/hdf5-110: Update to 1.10.10

Changes:	https://portal.hdfgroup.org/display/support/HDF5+1.10.10
9f76fc7c27
Stefan Eßer (se) · 1.10.9
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
fb16dfecae
Stefan Eßer (se) · 1.10.9
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
b7f05445c0
Tobias C. Berner (tcberner) · 1.10.9
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Frederic Culot <frederic@culot.org>
  *  Gea-Suan Lin <gslin@gslin.org>
  *  Glenn Johnson
  *  Greg Lewis <glewis@FreeBSD.org>
  *  Igor Serikov <iserikov@acm.org>
  *  Johannes Dieterich <dieterich@ogolem.org>
  *  Johannes Dieterich <jmd@FreeBSD.org>
  *  Johannes M Dieterich <jmd@FreeBSD.org>
  *  Johannes Meixner <johannes@perceivon.net>
  *  Ju Pengfei <jupengfei@gmail.com>
  *  Kay Lehmann <kay_lehmann@web.de>
  *  Klaus Aehlig <aehlig@linta.de>
  *  Kurt Kanzenbach <kurt@kmk-computers.de>
  *  Leland Wang <llwang@infor.org>
  *  Li-Lun Wang <llwang@infor.org>
  *  Markus Brueffer <markus@FreeBSD.org>
  *  NAKATA Maho <maho@FreeBSD.org>
  *  NAKATA, Maho <maho@FreeBSD.org>
  *  Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
  *  Nakata Maho <maho@FreeBSD.org>
  *  Pav Lucistnik <pav@FreeBSD.org>
  *  Pav Lucistnik <pav@oook.cz>
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni <giffunip@tutopia.com>
  *  Pedro Giffuni
  *  Pedro Giffuni <giffunip@asme.org>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Rong-En Fan <rafan@FreeBSD.org>
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Seamus Venasse <svenasse@polaris.ca>
  *  Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
  *  Shin-ya MURAKAMI <murashin@gfd-dennou.org>
  *  Shin-ya Murakami <murashin@gfd-dennou.org>
  *  Stas Timokhin <devel@stasyan.com>
  *  Stephen Montgomery-Smith <stephen@math.missouri.edu>
  *  Steve Wills <steve@mouf.net
  *  Steve Wills <steve@mouf.net>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
  *  TAKATSU Tomonari <tota@FreeBSD.org>
  *  TAOKA Fumiyoshi
  *  Thierry Thomas <thierry@pompo.net>
  *  Tim Cas <ports@stdrand.com>
  *  Uffe Jakobsen <uffe@uffe.org>
  *  Veniamin Gvozdikov <vg@FreeBSD.org>
  *  Vsevolod Stakhov <vsevolod@highsecure.ru>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Wen heping <wenheping@gmail.com>
  *  Ying-Chieh Liao <ijliao@FreeBSD.org>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  anholt@FreeBSD.org
  *  bacon@smithers.neuro.mcw.edu
  *  batman <batman@udel.edu>
  *  db
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  jbacon
  *  maintainer.freebsd@xpoundit.com
  *  mi
  *  rafan@infor.org
  *  shurd@FreeBSD.org
  *  thierry@pompo.net
  *  will

With hat:	portmgr
46196047a4
Po-Chuan Hsieh (sunpoet) · 1.10.9
science/hdf5-110: Add hd5-110 1.10.9 (copied from hdf5)

- Add PKGNAMESUFFIX
- Install files with suffix:
  - Install binary executables with -110 suffix
  - Install include files to hdf5-110 sub-directory
  - Install examples to EXAMPLESDIR with -110 suffix
- Add PORTSCOUT

PR:		265152
Exp-run by:	antoine
1bc7803607