CVE and update status of the FreeBSD ports tree4,826 unaddressed CVEs in 618 portsAll times are CET

Port details

science/hdf5-181.8.23

Hierarchical Data Format library (from NCSA) 1.8

Maintainer
thierry@FreeBSD.org
Packages
hdf5-18 1.8.23
Upstream
up to date
CPE
hdfgroup:hdf5 from the port
WWW
https://www.hdfgroup.org/HDF5/
Links
cgit · VuXML

Unaddressed (54) · The CVE record lists this version as affected, no VuXML entry names the CVE

CVE-2024-326089.8published 2024-10-09

HDF5 library through 1.14.3 has memory corruption in H5A__close resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-338749.8published 2024-05-14

HDF5 Library through 1.14.3 has a heap buffer overflow in H5O__mtime_new_encode in H5Omtime.c.

CVE-2024-326219.8published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5HG_read in H5HG.c (called from H5VL__native_blob_get in H5VLnative_blob.c), resulting in the corruption of the instruction pointer.

CVE-2024-326159.8published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5Z__nbit_decompress_one_byte in H5Znbit.c, caused by the earlier use of an initialized pointer.

CVE-2024-326119.8published 2024-05-14

HDF5 Library through 1.14.3 may use an uninitialized value in H5A__attr_release_table in H5Aint.c.

CVE-2024-291649.8published 2024-05-14

HDF5 through 1.14.3 contains a stack buffer overflow in H5R__decode_heap, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291599.8published 2024-05-14

HDF5 through 1.14.3 contains a buffer overflow in H5Z__filter_scaleoffset, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291579.8published 2024-05-14

HDF5 through 1.14.3 contains a heap buffer overflow in H5HG_read, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-326229.1published 2024-05-14

HDF5 Library through 1.14.3 contains a out-of-bounds read operation in H5FL_arr_malloc in H5FL.c (called from H5S_set_extent_simple in H5S.c).

CVE-2024-338778.8published 2024-05-14

HDF5 Library through 1.14.3 has a heap-based buffer overflow in H5T__conv_struct_opt in H5Tconv.c.

CVE-2024-338738.8published 2024-05-14

HDF5 Library through 1.14.3 has a heap-based buffer overflow in H5D__scatter_mem in H5Dscatgath.c.

CVE-2024-326238.8published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5VM_array_fill in H5VM.c (called from H5S_select_elements in H5Spoint.c).

CVE-2024-326148.8published 2024-05-14

HDF5 Library through 1.14.3 has a SEGV in H5VM_memcpyvv in H5VM.c.

CVE-2024-326178.8published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read caused by the unsafe use of strdup in H5MM_xstrdup in H5MM.c (called from H5G__ent_to_link in H5Glink.c).

CVE-2024-326058.8published 2024-05-14

HDF5 Library through 1.14.3 has a heap-based buffer over-read in H5VM_memcpyvv in H5VM.c (called from H5D__compact_readvv in H5Dcompact.c).

CVE-2024-291618.8published 2024-05-14

HDF5 through 1.14.3 contains a heap buffer overflow in H5A__attr_release_table, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2026-347347.8published 2026-04-09

HDF5 is software for managing data. In 1.14.1-2 and earlier, a heap-use-after-free was found in the h5dump helper utility. An attacker who can supply a malicious h5 file can trigger a heap use-after-free. The freed object is referenced in a memmove call from H5T__conv_struct. The original object was allocated by H5D__typeinfo_init_phase3 and freed by H5D__t…

CVE-2026-262007.8published 2026-02-19

HDF5 is software for managing data. Prior to version 1.14.4-2, an attacker who can control an `h5` file parsed by HDF5 can trigger a write-based heap buffer overflow condition. This can lead to a denial-of-service condition, and potentially further issues such as remote code execution depending on the practical exploitability of the heap overflow against mo…

CVE-2024-326097.5published 2024-05-14

HDF5 Library through 1.14.3 allows stack consumption in the function H5E_printf_stack in H5Eint.c.

CVE-2024-326247.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5T__ref_mem_setnull in H5Tref.c (called from H5T__conv_ref in H5Tconv.c), resulting in the corruption of the instruction pointer.

CVE-2024-326187.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5T__get_native_type in H5Tnative.c, resulting in the corruption of the instruction pointer.

CVE-2024-326197.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer overflow in H5T_copy_reopen in H5T.c, resulting in the corruption of the instruction pointer.

CVE-2024-326207.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read in H5F_addr_decode_len in H5Fint.c, resulting in the corruption of the instruction pointer.

CVE-2024-326127.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read in H5HL__fl_deserialize in H5HLcache.c, resulting in the corruption of the instruction pointer, a different vulnerability than CVE-2024-32613.

CVE-2024-326137.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read in the function H5HL__fl_deserialize in H5HLcache.c, a different vulnerability than CVE-2024-32612.

CVE-2024-326167.4published 2024-05-14

HDF5 Library through 1.14.3 contains a heap-based buffer over-read in H5O__dtype_encode_helper in H5Odtype.c.

CVE-2024-291657.4published 2024-05-14

HDF5 through 1.14.3 contains a buffer overflow in H5Z__filter_fletcher32, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291637.4published 2024-05-14

HDF5 through 1.14.3 contains a heap buffer overflow in H5T__bit_find, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291627.4published 2024-05-14

HDF5 through 1.13.3 and/or 1.14.2 contains a stack buffer overflow in H5HG_read, resulting in denial of service or potential code execution.

CVE-2024-291607.4published 2024-05-14

HDF5 through 1.14.3 contains a heap buffer overflow in H5HG__cache_heap_deserialize, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2024-291587.4published 2024-05-14

HDF5 through 1.14.3 contains a stack buffer overflow in H5FL_arr_malloc, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2026-261975.9published 2026-07-20

HDF5 is a high-performance library and a file format specification that implements the HDF5 data model. If a file is corrupted such that an array datatype's size, the number of elements, and the element size are not in agreement it can trigger an out of bounds read. The array datatype stores the full size of the datatype (`dt->shared->size`) separately fro…

CVE-2026-261995.9published 2026-07-20

HDF5 is a high-performance library and a file format specification that implements the HDF5 data model. If `H5Iget_name` is invoked on a group id with `0` for the size parameter, it will underflow when trying to place a null terminator in the buffer. This can occur if `H5Iget_name` is invoked in a way where `size` can be forced to zero, and there is importa…

CVE-2024-338755.7published 2024-05-14

HDF5 Library through 1.14.3 has a heap-based buffer overflow in H5O__layout_encode in H5Olayout.c, resulting in the corruption of the instruction pointer.

CVE-2024-338765.7published 2024-05-14

HDF5 Library through 1.14.3 has a heap buffer overflow in H5S__point_deserialize in H5Spoint.c.

CVE-2024-326105.7published 2024-05-14

HDF5 Library through 1.14.3 has a SEGV in H5T_close_real in H5T.c, resulting in a corrupted instruction pointer.

CVE-2024-326075.7published 2024-05-14

HDF5 Library through 1.14.3 has a SEGV in H5A__close in H5Aint.c, resulting in the corruption of the instruction pointer.

CVE-2024-326065.7published 2024-05-14

HDF5 Library through 1.14.3 may attempt to dereference uninitialized values in h5tools_str_sprint in tools/lib/h5tools_str.c (called from h5tools_dump_simple_data in tools/lib/h5tools_dump.c).

CVE-2024-291665.7published 2024-05-14

HDF5 through 1.14.3 contains a buffer overflow in H5O__linfo_decode, resulting in the corruption of the instruction pointer and causing denial of service or potential code execution.

CVE-2026-175725.5published 2026-07-27

Heap-based buffer overflow in the SOHM list-index deserialization code in HDF5 through 2.1.1 on all platforms allows attackers to cause a denial of service (crash) via a crafted HDF5 file whose shared-message list index declares a num_messages count exceeding list_max, triggering out-of-bounds heap reads and writes in H5SM__cache_list_deserialize and H5SM__…

CVE-2026-290435.5published 2026-04-10

HDF5 is software for managing data. In 1.14.1-2 and earlier, an attacker who can control an h5 file parsed by HDF5 can trigger a write-based heap buffer overflow condition in the H5T__ref_mem_setnull method. This can lead to a denial-of-service condition, and potentially further issues such as remote code execution depending on the practical exploitability …

CVE-2026-175745.2published 2026-07-27

HDF5 contains a NULL pointer dereference vulnerability. Processing a crafted HDF5 file containing an attribute with an invalid variable-length datatype type field may cause the application to crash when the attribute is read.

CVE-2026-175734.0published 2026-07-27

A double free vulnerability was discovered in the HDF5 library. Processing a crafted HDF5 file containing an oversized chunk size field via h5repack may cause the application to abort due to a double free.

CVE-2025-65161.9published 2025-06-23

A vulnerability has been found in HDF5 up to 1.14.6 and classified as critical. This vulnerability affects the function H5F_addr_decode_len of the file /hdf5/src/H5Fint.c. The manipulation leads to heap-based buffer overflow. An attack has to be approached locally. The exploit has been disclosed to the public and may be used.

CVE-2025-62701.9published 2025-06-19

A vulnerability, which was classified as critical, has been found in HDF5 up to 1.14.6. Affected by this issue is the function H5FS__sect_find_node of the file H5FSsection.c. The manipulation leads to heap-based buffer overflow. It is possible to launch the attack on the local host. The exploit has been disclosed to the public and may be used.

CVE-2025-62691.9published 2025-06-19

A vulnerability classified as critical was found in HDF5 up to 1.14.6. Affected by this vulnerability is the function H5C__reconstruct_cache_entry of the file H5Cimage.c. The manipulation leads to heap-based buffer overflow. Attacking locally is a requirement. The exploit has been disclosed to the public and may be used.

CVE-2025-29241.9published 2025-03-28

A vulnerability, which was classified as problematic, was found in HDF5 up to 1.14.6. This affects the function H5HL__fl_deserialize of the file src/H5HLcache.c. The manipulation of the argument free_block leads to heap-based buffer overflow. It is possible to launch the attack on the local host. The exploit has been disclosed to the public and may be used.

CVE-2025-29251.9published 2025-03-28

A vulnerability has been found in HDF5 up to 1.14.6 and classified as problematic. This vulnerability affects the function H5MM_realloc of the file src/H5MM.c. The manipulation of the argument mem leads to double free. The attack needs to be approached locally. The exploit has been disclosed to the public and may be used.

CVE-2025-29261.9published 2025-03-28

A vulnerability was found in HDF5 up to 1.14.6 and classified as problematic. This issue affects the function H5O__cache_chk_serialize of the file src/H5Ocache.c. The manipulation leads to null pointer dereference. An attack has to be approached locally. The exploit has been disclosed to the public and may be used.

CVE-2025-29231.9published 2025-03-28

A vulnerability, which was classified as problematic, has been found in HDF5 up to 1.14.6. Affected by this issue is the function H5F_addr_encode_len of the file src/H5Fint.c. The manipulation of the argument pp leads to heap-based buffer overflow. Attacking locally is a requirement. The exploit has been disclosed to the public and may be used.

CVE-2025-29131.9published 2025-03-28

A vulnerability was found in HDF5 up to 1.14.6. It has been rated as critical. Affected by this issue is the function H5FL__blk_gc_list of the file src/H5FL.c. The manipulation of the argument H5FL_blk_head_t leads to use after free. An attack has to be approached locally. The exploit has been disclosed to the public and may be used.

CVE-2025-29141.9published 2025-03-28

A vulnerability classified as problematic has been found in HDF5 up to 1.14.6. This affects the function H5FS__sinfo_Srialize_Sct_cb of the file src/H5FScache.c. The manipulation of the argument sect leads to heap-based buffer overflow. Local access is required to approach this attack. The exploit has been disclosed to the public and may be used.

CVE-2025-29151.9published 2025-03-28

A vulnerability classified as problematic was found in HDF5 up to 1.14.6. This vulnerability affects the function H5F__accum_free of the file src/H5Faccum.c. The manipulation of the argument overlap_size leads to heap-based buffer overflow. Attacking locally is a requirement. The exploit has been disclosed to the public and may be used.

CVE-2025-29121.9published 2025-03-28

A vulnerability was found in HDF5 up to 1.14.6. It has been declared as problematic. Affected by this vulnerability is the function H5O_msg_flush of the file src/H5Omessage.c. The manipulation of the argument oh leads to heap-based buffer overflow. The attack needs to be approached locally. The exploit has been disclosed to the public and may be used.

VuXML only (0) · listed, port not fixed yet

None. pkg audit reports nothing for this version.

Possibly backported (16) · The CVE record gives a range ending in a newer branch, check the branch changelog

This port tracks an older, still maintained branch. The CVE record only says “before X” with X in a newer branch, so it cannot tell whether this branch received the fix. This is an estimate, not a confirmation. These CVEs are not counted as unaddressed.
CVE-2019-83966.5published 2019-02-17

A buffer overflow in H5O__layout_encode in H5Olayout.c in the HDF HDF5 through 1.10.4 library allows attackers to cause a denial of service via a crafted HDF5 file. This issue was triggered while repacking an HDF5 file, aka "Invalid write of size 2."

CVE-2018-174376.5published 2018-09-24

Memory leak in the H5O_dtype_decode_helper() function in H5Odtype.c in the HDF HDF5 through 1.10.3 library allows attackers to cause a denial of service (memory consumption) via a crafted HDF5 file.

CVE-2018-174386.5published 2018-09-24

A SIGFPE signal is raised in the function H5D__select_io() of H5Dselect.c in the HDF HDF5 through 1.10.3 library during an attempted parse of a crafted HDF file, because of incorrect protection against division by zero. It could allow a remote denial of service attack.

CVE-2018-174326.5published 2018-09-24

A NULL pointer dereference in H5O_sdspace_encode() in H5Osdspace.c in the HDF HDF5 through 1.10.3 library allows attackers to cause a denial of service via a crafted HDF5 file.

CVE-2018-174336.5published 2018-09-24

A heap-based buffer overflow in ReadGifImageDesc() in gifread.c in the HDF HDF5 through 1.10.3 library allows attackers to cause a denial of service via a crafted HDF5 file. This issue was triggered while converting a GIF file to an HDF file.

CVE-2018-174346.5published 2018-09-24

A SIGFPE signal is raised in the function apply_filters() of h5repack_filters.c in the HDF HDF5 through 1.10.3 library during an attempted parse of a crafted HDF file, because of incorrect protection against division by zero. It could allow a remote denial of service attack.

CVE-2018-174356.5published 2018-09-24

A heap-based buffer over-read in H5O_attr_decode() in H5Oattr.c in the HDF HDF5 through 1.10.3 library allows attackers to cause a denial of service via a crafted HDF5 file. This issue was triggered while converting an HDF file to GIF file.

CVE-2018-174366.5published 2018-09-24

ReadCode() in decompress.c in the HDF HDF5 through 1.10.3 library allows attackers to cause a denial of service (invalid write access) via a crafted HDF5 file. This issue was triggered while converting a GIF file to an HDF file.

CVE-2018-172336.5published 2018-09-20

A SIGFPE signal is raised in the function H5D__create_chunk_file_map_hyper() of H5Dchunk.c in the HDF HDF5 through 1.10.3 library during an attempted parse of a crafted HDF file, because of incorrect protection against division by zero. It could allow a remote denial of service attack.

CVE-2018-172346.5published 2018-09-20

Memory leak in the H5O__chunk_deserialize() function in H5Ocache.c in the HDF HDF5 through 1.10.3 library allows attackers to cause a denial of service (memory consumption) via a crafted HDF5 file.

CVE-2018-172376.5published 2018-09-20

A SIGFPE signal is raised in the function H5D__chunk_set_info_real() of H5Dchunk.c in the HDF HDF5 1.10.3 library during an attempted parse of a crafted HDF file, because of incorrect protection against division by zero. This issue is different from CVE-2018-11207.

CVE-2017-175066.5published 2017-12-11

In HDF5 1.10.1, there is an out of bounds read vulnerability in the function H5Opline_pline_decode in H5Opline.c in libhdf5.a. For example, h5dump would crash when someone opens a crafted hdf5 file.

CVE-2020-108095.5published 2020-03-22

An issue was discovered in HDF5 through 1.12.0. A heap-based buffer overflow exists in the function Decompress() located in decompress.c. It can be triggered by sending a crafted file to the gif2h5 binary. It allows an attacker to cause Denial of Service.

CVE-2020-108105.5published 2020-03-22

An issue was discovered in HDF5 through 1.12.0. A NULL pointer dereference exists in the function H5AC_unpin_entry() located in H5AC.c. It allows an attacker to cause Denial of Service.

CVE-2020-108115.5published 2020-03-22

An issue was discovered in HDF5 through 1.12.0. A heap-based buffer over-read exists in the function H5O__layout_decode() located in H5Olayout.c. It allows an attacker to cause Denial of Service.

CVE-2020-108125.5published 2020-03-22

An issue was discovered in HDF5 through 1.12.0. A NULL pointer dereference exists in the function H5F_get_nrefs() located in H5Fquery.c. It allows an attacker to cause Denial of Service.

Fixed (1)

VuXML entries whose affected range this version has left.

Commits (112)

Daniel Engberg (diizzy) · 1.8.23
*/*: Remove incorrect libtool dependency

All these ports builds without libtool

Tested using Poudriere

Approved by:	portmgr (blanket, build fix)
3ee20599dc
Thierry Thomas (thierry) · 1.8.23
science/hdf5-18: upgrade to 1.8.23

This fixes the build with recent clang.
3518336673
Stefan Eßer (se)
Remove WWW entries moved into port Makefiles

Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.

This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.

Approved by:		portmgr (tcberner)
fb16dfecae
Stefan Eßer (se)
Add WWW entries to port Makefiles

It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.

Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.

There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.

This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.

There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.

The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.

Approved by:		portmgr (tcberner)
b7f05445c0
Tobias C. Berner (tcberner)
science: remove 'Created by' lines

A big Thank You to the original contributors of these ports:

  *  Andreas Fehlner <fehlner@gmx.de>
  *  Brad Huntting <huntting@glarp.com>
  *  Chao Shin <quakelee@cn.FreeBSD.org>
  *  Cheng-Lung Sung <clsung@FreeBSD.org>
  *  Chia-Hsing Yu <me@davidyu.org>
  *  Chris Rees <utisoft@gmail.com>
  *  David Naylor <dbn@FreeBSD.org>
  *  Dmitry Sivachenko <demon@FreeBSD.org>
  *  Ed Schouten <ed@FreeBSD.org>
  *  Eric Freeman <freebsdports@chillibear.com>
  *  Erik B Knudsen
  *  Fernan Aguero <fernan@iib.unsam.edu.ar>
  *  Frederic Culot <frederic@culot.org>
  *  Gea-Suan Lin <gslin@gslin.org>
  *  Glenn Johnson
  *  Greg Lewis <glewis@FreeBSD.org>
  *  Igor Serikov <iserikov@acm.org>
  *  Johannes Dieterich <dieterich@ogolem.org>
  *  Johannes Dieterich <jmd@FreeBSD.org>
  *  Johannes M Dieterich <jmd@FreeBSD.org>
  *  Johannes Meixner <johannes@perceivon.net>
  *  Ju Pengfei <jupengfei@gmail.com>
  *  Kay Lehmann <kay_lehmann@web.de>
  *  Klaus Aehlig <aehlig@linta.de>
  *  Kurt Kanzenbach <kurt@kmk-computers.de>
  *  Leland Wang <llwang@infor.org>
  *  Li-Lun Wang <llwang@infor.org>
  *  Markus Brueffer <markus@FreeBSD.org>
  *  NAKATA Maho <maho@FreeBSD.org>
  *  NAKATA, Maho <maho@FreeBSD.org>
  *  Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
  *  Nakata Maho <maho@FreeBSD.org>
  *  Pav Lucistnik <pav@FreeBSD.org>
  *  Pav Lucistnik <pav@oook.cz>
  *  Pedro F. Giffuni
  *  Pedro F. Giffuni <giffunip@tutopia.com>
  *  Pedro Giffuni
  *  Pedro Giffuni <giffunip@asme.org>
  *  Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Rong-En Fan <rafan@FreeBSD.org>
  *  Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
  *  Seamus Venasse <svenasse@polaris.ca>
  *  Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
  *  Shin-ya MURAKAMI <murashin@gfd-dennou.org>
  *  Shin-ya Murakami <murashin@gfd-dennou.org>
  *  Stas Timokhin <devel@stasyan.com>
  *  Stephen Montgomery-Smith <stephen@math.missouri.edu>
  *  Steve Wills <steve@mouf.net
  *  Steve Wills <steve@mouf.net>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
  *  Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
  *  TAKATSU Tomonari <tota@FreeBSD.org>
  *  TAOKA Fumiyoshi
  *  Thierry Thomas <thierry@pompo.net>
  *  Tim Cas <ports@stdrand.com>
  *  Uffe Jakobsen <uffe@uffe.org>
  *  Veniamin Gvozdikov <vg@FreeBSD.org>
  *  Vsevolod Stakhov <vsevolod@highsecure.ru>
  *  Wen Heping <wen@FreeBSD.org>
  *  Wen Heping <wenheping@gmail.com>
  *  Wen heping <wenheping@gmail.com>
  *  Ying-Chieh Liao <ijliao@FreeBSD.org>
  *  Yuri Victorovich <yuri@rawbw.com>
  *  anholt@FreeBSD.org
  *  bacon@smithers.neuro.mcw.edu
  *  batman <batman@udel.edu>
  *  db
  *  gurkan@phys.ethz.ch
  *  ijliao
  *  jbacon
  *  maintainer.freebsd@xpoundit.com
  *  mi
  *  rafan@infor.org
  *  shurd@FreeBSD.org
  *  thierry@pompo.net
  *  will

With hat:	portmgr
46196047a4
Po-Chuan Hsieh (sunpoet)
*/*: Replace science/szip with science/libaec

- Bump PORTREVISION of dependent ports for dependency change

szip does not allow redistribution in binary form without proper commercial
license. Its LICENSE_PERMS should be set to no-auto-accept which blocks building
this port, therefore building dependent ports are also blocked. Switch all
dependent ports to science/libaec to avoid conflicts and license issue.

PR:		228743, 246097, 250165
328ae40742
Stefan Eßer (se)
science/hdf5-18: Add CPE information

Approved by:	portmgr (blanket)
206d886b5b
Mathieu Arnold (mat)
Remove # $FreeBSD$ from Makefiles.
305f148f48
Gerald Pfeifer (gerald)
Bump PORTREVISION for ports depending on the canonical version of GCC as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
ea8c8ec7da
Gerald Pfeifer (gerald)
Related to revision 499061 bump ports with USES=fortran to have them benefit from the improved situation where libgcc_s is only used when absolutely necessary.

Suggested by:	tijl
879e75a659
Gerald Pfeifer (gerald)
Bump PORTREVISION for ports depending on the canonical version of GCC defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590
a9f015d155
Thierry Thomas (thierry)
Upgrade science/hdf5-18 to 1.8.21.

Release notes at:
<https://portal.hdfgroup.org/display/HDF5/Software+Changes+from+Release+to+Release+for+HDF5-1.8#SoftwareChangesfromReleasetoReleaseforHDF5-1.8-Release1.8.21ofMay2018versusRelease1.8.20>

PR:		233071
Submitted by:	wenheping2000 (at) hotmail.com (Original maintainer)
bb7521d651
Gerald Pfeifer (gerald)
Bump PORTREVISION for ports depending on the canonical version of GCC in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542
09f9633cb6
Thierry Thomas (thierry)
Fix plist whith FORTRAN option.

PR:		227857
Submitted by:	jwb
2baf4ff4ee
Alexey Dokuchaev (danfe)
These two ports build and package without issues now on 10.4-STABLE running under QEMU 2.9.0.
a15e60cfd1
Thierry Thomas (thierry)
Forgot to bump revision of FORTRAN libs in the previous commit.
77bcb2723e
Thierry Thomas (thierry)
Upgrade HDF5 to 1.8.20.

Release notes at
https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20-RELEASE.txt
c25c56bf29
Thierry Thomas (thierry)
Fix libhdf5-18.settings and suffix usage in tools.
d66d640322
Gerald Pfeifer (gerald) · 1.8.19_1
Bump PORTREVISION for ports depending on the canonical version of GCC (via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275
e59c88cece
Thierry Thomas (thierry) · 1.8.19
Upgrade science/hdf5-18 to 1.8.19.

Changelog at
<https://support.hdfgroup.org/HDF5/doc1.8/ADGuide/Changes.html#1819>.
f58c64ebdf
Gerald Pfeifer (gerald) · 1.8.18_2
Bump PORTREVISIONs for ports depending on the canonical version of GCC and lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707
04d6f52202
Gerald Pfeifer (gerald) · 1.8.18_1
Bump PORTREVISIONS for ports depending on the canonical version of GCC and lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry
e4b7b9118a
Thierry Thomas (thierry) · 1.8.18
Upgrade to 1.8.18.

Changelog at https://support.hdfgroup.org/HDF5/doc1.8/ADGuide/Changes.html#1818
fc40df9370
Thierry Thomas (thierry) · 1.8.17
Resurrect hdf5-18, because it is required by french/med and french/aster.

Two releases of HDF5 are available for download. HDF5-1.10 should read files
created with earlier releases, but problem arise with MED and this version.
b3fbf4dca4
Sunpoet Po-Chuan Hsieh (sunpoet)
- Remove science/hdf5-18
41327ce495
Tijl Coosemans (tijl) · 1.8.10_2
When linking a library libA with a library libB using libtool, if libB.la exists, libtool will add all libraries libB.la refers to (dependency_libs field) to the linker command line and store them in the dependency_libs field of libA.la.  So everything that subsequently links with libA will also link to these extra libraries.  This causes too much overlinking.

This commit modifies Mk/Uses/libtool.mk so it empties the dependency_libs
field in .la libraries during staging.  However, because .la libraries have
very limited use when dependency_libs is empty it makes sense to completely
remove them during staging.

So with this commit USES=libtool is modified to remove .la libraries and a
new form (USES=libtool:keepla) is introduced in case they need to be kept
(dependency_libs is still emptied).

PORTREVISION is bumped on all ports with USES=libtool that install .la
libraries.  Most ports are also changed to add :keepla because .la
libraries have to be kept around as long as there are dependent ports with
.la libraries that refer to them in their dependency_libs field.  In most
cases :keepla can be removed again as soon as all dependent ports that
install .la libraries have some form of USES=libtool added to their
Makefile.

PR:		ports/188759
Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)
aad09bc5e2
Dmitry Marakasov (amdmi3) · 1.8.10_1
- USE_BZIP2 -> USES=tar:bzip2 - Use new LIB_DEPENDS syntax

Approved by:	portmgr (blanket)
d09cd0085e
Tijl Coosemans (tijl) · 1.8.10_1
Add USES=libtool to fix a linker problem when the FORTRAN option is enabled on versions of FreeBSD where the base system binutils is too old to link object files generated by lang/gcc (gfortran).

PR:		ports/187252
dfe525bc47
Tijl Coosemans (tijl) · 1.8.10
Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)
564a799c71
Sunpoet Po-Chuan Hsieh (sunpoet) · 1.8.10
- Fix PKGNAME collision
09e3717ba4
Sunpoet Po-Chuan Hsieh (sunpoet) · 1.8.10
- Use CONFLICTS_INSTALL instead of CONFLICTS - Remove NO_LATEST_LINK
ae2c7f2a24
Bryan Drewery (bdrewery) · 1.8.10
- Remove NO_STAGE as these have been tested to be safe

With hat:	portmgr
2d8b17ea39
Baptiste Daroussin (bapt) · 1.8.10
Add NO_STAGE all over the place in preparation for the staging support (cat: science)
1dd0d087e7
Sunpoet Po-Chuan Hsieh (sunpoet) · 1.8.10
- Update to 1.8.10 patch 1 - Update MASTER_SITES - Cosmetic change - Take maintainership - Reformat pkg-descr

Changes:	http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.10-patch1/src/hdf5-1.8.10-patch1-RELEASE.txt
PR:		ports/176809
Submitted by:	sunpoet (myself)
Approved by:	maintainer (timeout, 24 weeks)
0d2b3f23d1
Baptiste Daroussin (bapt) · 1.8.9
Convert science to new options framework
70311449fa
Sunpoet Po-Chuan Hsieh (sunpoet) · 1.8.9
- Update to 1.8.9 - Update MASTER_SITES - Pet portlint: remove ABI version number from LIB_DEPENDS - Restore missing newline at the end of patch file

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.9-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:		ports/168142
Submitted by:	sunpoet (myself)
Approved by:	maintainer (timeout, 18 days)
7280313c2e
Eitan Adler (eadler) · 1.8.8
Update to 1.8.8

Changes:

Fix bad shell scripts; all regression tests pass now

PR:		ports/163595
Submitted by:	Rob Farmer <rfarmer@predatorlabs.net>
Approved by:	maintainer timeout (49 days)
aac32349c9
Martin Wilke (miwi) · 1.8.7
- Remove WITH_FBSD10_FIX, is no longer needed
e1c6649edf
Martin Wilke (miwi) · 1.8.7
- Fix build with FreeBSD 10
d31032cfe5
Sunpoet Po-Chuan Hsieh (sunpoet) · 1.8.7
- Update to 1.8.7

Changes:	http://hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:		ports/158394
Submitted by:	sunpoet (myself)
Approved by:	maintainer (timeout, 16 days)
ac46a8747a
Frederic Culot (culot) · 1.8.6
- Update to 1.8.6

Changes:	http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:		ports/155458
Submitted by:	Rob Farmer <rfarmer AT predatorlabs.net>
Approved by:	Quincey Koziol <koziol AT hdfgroup.org> (maintainer)
b1ec4c1c2d
Sunpoet Po-Chuan Hsieh (sunpoet) · 1.8.5
- Update to 1.8.5 patch 1 - Add option: DEBUG

Changes:	http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:		ports/153400 (based on)
Submitted by:	Rob Farmer <rfarmer@predatorlabs.net>
Approved by:	maintainer (timeout, 17 days)
b4c294df96
Greg Larkin (glarkin) · 1.8.4
- Fixed WWW: link

Submitted by:	sunpoet@sunpoet.net (via email)
fa6e62b9ce
Greg Larkin (glarkin) · 1.8.4
- Added missing pkg-plist entry

Reported by:	QAT
f15f31f38e
Greg Larkin (glarkin) · 1.8.4
- Update to 1.8.4

PR:		ports/144782
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
Approved by:	koziol@hdfgroup.org (maintainer, implicit, timeout - 49 days)
aa8cd682fb
Gerald Pfeifer (gerald) · 1.8.3_1
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now implies lang/gcc44 up from lang/gcc43.

Approved by:	portmgr
27ab5137ce
Marcelo Araujo (araujo) · 1.8.3
- Update to 1.8.3.

PR:		ports/138052
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
Approved by:	Quincey Koziol <koziol@hdfgroup.org> (maintainer)
eedb4d4bf1
Martin Wilke (miwi) · 1.8.2_1
- Fix fetch
bd7c40c203
Pav Lucistnik (pav) · 1.8.2_1
- Resolve LATEST_LINK conflict
aa952fd48f
Gerald Pfeifer (gerald) · 1.8.2_1
Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.
05a2cbc2b4