science/netcdf 4.10.1

- Convert to new test framework

- Convert to new options dependency and target helper - Remove PORTSCOUT

- Convert to new options helper

- Update to 1.8.15 - Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

- Add GitHub repository to WWW

- Update to 4.3.3.1 - Strip shared library

Changes:	http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html

- Fix build with DOXYGEN option

- Update to 4.3.3 - Use LIBS instead of LDFLAGS

Changes:	http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html

- Update to 1.8.14 - Update MASTER_SITES - Use INSTALL_TARGET=install-strip instead of MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP} - Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Cleanup plist

Fix packaging with default options (without DOXYGEN)

With hat:	portmgr

- Update to 4.3.2 (from science/netcdf4) - Bump PORTREVISION for science/netcdf shlib change and   dependency change from science/netcdf4 to science/netcdf [1]

Changes:	http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html
Approved by:	portmgr (bapt) [1]

When linking a library libA with a library libB using libtool, if libB.la exists, libtool will add all libraries libB.la refers to (dependency_libs field) to the linker command line and store them in the dependency_libs field of libA.la.  So everything that subsequently links with libA will also link to these extra libraries.  This causes too much overlinking.

This commit modifies Mk/Uses/libtool.mk so it empties the dependency_libs
field in .la libraries during staging.  However, because .la libraries have
very limited use when dependency_libs is empty it makes sense to completely
remove them during staging.

So with this commit USES=libtool is modified to remove .la libraries and a
new form (USES=libtool:keepla) is introduced in case they need to be kept
(dependency_libs is still emptied).

PORTREVISION is bumped on all ports with USES=libtool that install .la
libraries.  Most ports are also changed to add :keepla because .la
libraries have to be kept around as long as there are dependent ports with
.la libraries that refer to them in their dependency_libs field.  In most
cases :keepla can be removed again as soon as all dependent ports that
install .la libraries have some form of USES=libtool added to their
Makefile.

PR:		ports/188759
Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

Add USES=gmake to fix installation on systems that use fmake by default.

Some makefiles in this port list "configure" as a dependency of some files.
Because "configure" gets modified by USES=libtool, this means make tries to
regenerate them.  The commands for these files detect that nothing has
changed however and they don't actually regenerate the files.  Both bmake
and gmake leave it at that, but fmake reruns all targets that depend on
these files anyway.  This fails because it requires tools that aren't
available.

Reported by:	antoine

- Add USES=libtool to fix linker problem on FreeBSD/i386 8.x and   FreeBSD/ia64 (binutils too old). - Staging.

PR:		ports/186946
Approved by:	sunpoet (maintainer)

Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

- Fix PKGNAME collision

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

Convert science to new options framework

- Remove WITH_FBSD10_FIX, is no longer needed

- Fix build on FreeBSD 10

- Use bsd.port.options.mk - CPPFLAGS is now added to CONFIGURE_ENV by Mk/bsd.port.Mk - Remove obsolete MD5 checksum

- Use LOCAL/sunpoet as backup MASTER_SITES

Approved by:	pgollucci (mentor)

- Update MAINTAINER to my FreeBSD.org address

Approved by:	pgollucci (mentor)

- Update MASTER_SITES - Simplify NOPORTDOCS patch - Remove NOPORTEXAMPLES section - Remove unnecessary post-install: target - Remove patch for fortran/cfortran.h

PR:		ports/146415
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)

- Update WWW

PR:		138869
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
Feature safe:	yes

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now implies lang/gcc44 up from lang/gcc43.

Approved by:	portmgr

- Fix Fortran linking - Add a slaveport so fortran enabled netcdf can be packaged

PR:		ports/132430
Submitted by:	thierry
Approved by:	maintainer timeout (14 days)

- Fix OPTIONS processing

PR:		ports/130740
Submitted by:	Shin'ya Murakami <murashin@gfd-dennou.org>

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

- remove unnecessary strip - install real documents - fix NOPORTDOCS - add NOPORTEXAMPLES

PR:			ports/129225
Submitted by:		sunpoet (maintainer)

- Fix PORTDOCS

- Respect PORTDOCS

Reported by:	IonBot

- Add experimental WITH_FORTRAN knob and a patch to have it compile. - It's off by default as it doesn't seem to be required by any port. - No functional change.

PR:		ports/125915
Submitted by:	Pedro F. Giffuni <pfgshield-freebsd@yahoo.com>
Approved by:	maintainer timeout (>2 Weeks)

- Add regression-target since the port recommends running the checks before installing. - Fix distinfo - Bump portrevision

PR:		ports/125550
Submitted by:	Pedro F. Giffuni <pfgshield-freebsd@yahoo.com>
Approved by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer, with changes)

- Update to 3.6.3

PR:		ports/124871
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net> (maintainer)

- Set --mandir and --infodir in CONFIGURE_ARGS if the configure script   supports them.  This is determined by running ``configure --help'' in   do-configure target and set the shell variable _LATE_CONFIGURE_ARGS   which is then passed to CONFIGURE_ARGS. - Remove --mandir and --infodir in ports' Makefile where applicable   Few ports use REINPLACE_CMD to achieve the same effect, remove them too. - 

PR:		ports/111470
Approved by:	portmgr
Discussed with:	stas (Mk/*), gerald (info related stuffs)
Tested by:	pointyhat exp run

science/netcdf - Update to 3.6.2

graphics/gmt
math/grace
math/gri
math/p5-NetCDF
math/py-scientific
math/ruby-netcdf
science/gnudatalanguage
science/minc
science/minc2
science/v_sim
science/vis5d+
- Bump PORTREVISION for the changing of science/netcdf's major library version number

PR:		111347
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
Approved by:	clsung (mentor)

- Update MASTER_SITES - Fix build with gcc 4.X

PR:		ports/107117
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)

Hand maintainership to submitter

PR:		98290
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>

- Update to 3.6.1

PR:		ports/94504
Submitted by:	Ports Fury

Repocopy math/netcdf to science/netcdf, along with cdf, hdf and hdf5.

PR:		92497
Submitted by:	/me
Repocopied by:	marcus

- Add SHA256

At Kris's request, back out the MACHINE_ARCH spelling correction until after 5.4-RELEASE.

Assist getting more ports working on AMD64 by obeying the Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.

- Chase name change in DISTNAME

PR:		ports/78315
Submitted by:	Ports Fury

Update to version 3.0.6p1

PR:		ports/77695
Submitted by:	Sam Lawrance <boris at brooknet.com.au>

BROKEN: Unfetchable

Update to version 3.6.0

PR:		ports/75954
Submitted by:	Ports Fury

- Add CONFLICTS between math/netcdf and science/hdf, they both install   same binaries.

PR:		ports/64646, ports/64647
Submitted by:	Kay Lehmann <kay_lehmann@web.de>