science/py-h5py 3.16.0_1

Convert Python ports to FLAVORS.

Ports using USE_PYTHON=distutils are now flavored.  They will
  automatically get flavors (py27, py34, py35, py36) depending on what
  versions they support.

  There is also a USE_PYTHON=flavors for ports that do not use distutils
  but need FLAVORS to be set.  A USE_PYTHON=noflavors can be set if
  using distutils but flavors are not wanted.

  A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been
  added to cope with Python ports that did not have the Python
  PKGNAMEPREFIX but are flavored.

  USES=python now also exports a PY_FLAVOR variable that contains the
  current python flavor.  It can be used in dependency lines when the
  port itself is not python flavored.  For example, deskutils/calibre.

  By default, all the flavors are generated.  To only generate flavors
  for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define
  BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf.

  In all the ports with Python dependencies, the *_DEPENDS entries MUST
  end with the flavor so that the framework knows which to build/use.
  This is done by appending '@${PY_FLAVOR}' after the origin (or
  @${FLAVOR} if in a Python module with Python flavors, as the content
  will be the same).  For example:

    RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR}

PR:		223071
Reviewed by:	portmgr, python
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D12464

Update to 2.7.0

PR:		219754
Submitted by:	xmj (maintainer)

Update science/hdf5 to 1.10.1

- Bump PORTREVISION for shlib change

Changes:	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt

- Remove bogus NO_ARCH: this module installs .so files - Cosmetic fixes

Approved by:	portmgr blanket

Change MAINTAINER from xmj@FreeBSD.org to johannes@perceivon.net

PR:           210265
Submitted by: Johannes Jost Meixner (johannes@perceivon.net)
Approved by:  pi (mentor)

Several ports: Change MAINTAINER from xmj@chaot.net to xmj@FreeBSD.org

PR:		209746
Submitted by:	xmj

science/py-h5py: 2.5.0 -> 2.6.0

PR:		209630
Submitted by:	Johannes Jost Meixner <xmj@chaot.net> (maintainer)

- Update to 1.10.0 - Add LICENSE_FILE - Remove outdated PORTSCOUT - Re-enable SZIP option by default: it was changed unintentionally in r398300

Changes:	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt
		https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Remove ${PORTSDIR}/ from dependencies, categories r, s, t, and u.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 2.5.0 - Switch to options helper - Switch to do-test

PR:		205137
Submitted by:	maintainer
Approved by:	mat (mentor)
Differential Revision:	D4507

- Update to 1.8.15 - Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.15-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

Update ports in the s* categores to not use GH_COMMIT.

With minor cleanups to make things simpler.

With hat:	portmgr
Sponsored by:	Absolight

- Update to 1.8.14 - Update MASTER_SITES - Use INSTALL_TARGET=install-strip instead of MAKE_ENV=INSTALL_STRIP_FLAG=${STRIP} - Bump PORTREVISION for science/hdf5 shlib change

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html

science/py-h5py: upgrade to 2.4.0

- upgrade to 2.4.0

Differential Revision:	https://reviews.freebsd.org/D1456
Approved by:	koobs (mentor)

Update "BSD" license in science category

- Convert ports of science/ and security to new USES=python

Approved by:	portmgr (implicit)

Update the default version of GCC in the Ports Collection from GCC 4.7.4 to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

science/py-h5py: Upgrade to 2.3.0

- Update to 2.3.0
- Remove BROKEN mark

Approved by:	swills (mentor)

Mark BROKEN: Does not build

cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/h5fd.c -o build/temp.freebsd-10.0-RELEASE-p3-amd64-2.7/h5py/h5fd.o
In file included from h5py/h5fd.c:259:
In file included from h5py/api_compat.h:21:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
h5py/h5fd.c:857:39: error: use of undeclared identifier 'H5FD_MPIPOSIX'
  __pyx_t_1 = __Pyx_PyInt_to_py_hid_t(H5FD_MPIPOSIX); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 34; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
                                      ^
1 warning and 1 error generated.
error: command 'cc' failed with exit status 1
*** Error code 1

Reported by:	pkg-fallout

- Update to 1.8.12 (from science/hdf5-18) - Add LICENSE - Convert to new LIB_DEPENDS format - Convert to new options helper - Use NOT_FOR_ARCHS - Strip shared library - Remove deprecated PTHREAD_* - Use MAKE_CMD - Bump PORTREVISION for science/hdf5 shlib change [1]

Changes:	http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.12-RELEASE.txt
		http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
Approved by:	portmgr (bapt) [1]

Update the default version of GCC used in the Ports Collection from GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

science/py-h5py: update to 2.2.1

- Update to 2.2.1
- Add EXAMPLES

PR:		ports/184746
Submitted by:	maintainer

science/py-h5py: update to 2.2.0

- Update to 2.2.0
- Add LICENSE (BSD)
- Add DOCS
- Pass maintainership to submitter

PR:		ports/183519
Submitted by:	Johannes Jost Meixner <xmj chaot.net>
Approved by:	maintainer (timeout, 2 weeks, 3 times)

- Update to 2.1.1 - Remove leading article from COMMENT - Use default dependency for science/hdf5-18 - Add patch

PR:		ports/181483
Submitted by:	Johannes Meixner <xmj@chaot.net>
Approved by:	wg (mentor)

Update to libmpc version 1.0.1 which brings the following fixes:

- Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

science/py-h5py: Add OPTION support for HDF5 1.8

- Add OPTION to use science/hdf5-18 instead of science/hdf5

PR:		ports/179572
Submitted by:	Johannes Meixner <xmj@chaot.net>
Approved by:	maintainer timeout (8 weeks)

- remove MD5

- Add py-numpy into RUN_DEPENDS

PR:		ports/143419
Submitted by:	TAOKA Fumiyoshi <fmysh AT iijmio-mail.jp> (maintainer)

- Update to 1.2.1

PR:		ports/138984
Submitted by:	wenheping@gmail.com(myself)
Approved by:	maintainer,	jadawin(co-mentor)
Feature safe:	yes

Add py-h5py 1.2.0, a general-purpose Python interface to the HDF5 library.

PR:		ports/136096
Submitted by:	TAOKA Fumiyoshi