science/getdp 4.0.0.r1

Convert a bunch of EXTRACT_SUFX=... into USES=tar:...

Approved by:	portmgr (not really, but touches unstaged ports)

Rename all patches that contain '::' as a path separator, and use '__' instead.

Remove indefinite articles and trailing periods from COMMENT, plus minor COMMENT typos and surrounding whitespace fixes. A few Makefiles where not included as they contain Latin-1 characters that break the Phabricator workflow. Categories P-S.

CR:		D422
Approved by:	portmgr (bapt)

Modernize LIB_DEPENDS

With hat:	portmgr

Remove NOPORTDOCS and NOPORTEXAMPLES.

Update the default version of GCC used in the Ports Collection from GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

- Implement staging.

Update to libmpc version 1.0.1 which brings the following fixes:

- Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)

Add NO_STAGE all over the place in preparation for the staging support (cat: science)

Update math/gsl to 1.16 and adjust some dependent ports

- forgot to remove a file in the last update.

Feature safe:	yes

- Update to 2.2.1.

Feature safe:	yes

- update png to 1.5.10

- remove MD5

Fix build; use print/texinfo for texi2pdf instead of print/teTeX-base.

Maintainer: stephen@missouri.edu -> stephen@FreeBSD.org

Approved by: maho (mentor)

Update math/gsl to 1.15, and adjust PORTREVISION and LIB_DEPENDS of dependent ports

- Bump PORTREVISION to chase the update of math/gsl

- update to 1.4.1 Reviewed by:	exp8 run on pointyhat Supported by:	miwi

- update to jpeg-8

Chase math/gsl update, bump PORTREVISION

- Mark MAKE_JOBS_UNSAFE

Reported by:	pointyhat

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now implies lang/gcc44 up from lang/gcc43.

Approved by:	portmgr

- bump all port that indirectly depends on libjpeg and have not yet been bumped or updated Requested by:	edwin

- Update maintainer mail address

PR:		ports/133397
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu> (maintainer)
Approved by:	tabthorpe (co-mentor)

- Pass maintainership along.

No longer pass FC, F77 and FFLAGS to CONFIGURE_ENV; this is now done via Mk/bsd.gcc.mk.And for this port, CONFIGURE_ENV was bogus to begin with.

Submitted by:	Steven Kreuzer <skreuzer@exit2shell.com>

- Chase gsl shlib bump

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. Specifically, newer autoconf (> 2.13) has different semantic of the configure target. In short, one should use --build=CONFIGURE_TARGET instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk
 - Remove CONFIGURE_TARGET hack in various bsd.*.mk
 - USE_GNOME=gnometarget is now an no-op

Changes to individual ports, other than removing the CONFIGURE_TARGET hack:

= pkg-plist changed (due to the ugly CONFIGURE_TARGET prefix in * executables)
  - comms/gnuradio
  - science/abinit
  - science/elmer-fem
  - science/elmer-matc
  - science/elmer-meshgen2d
  - science/elmerfront
  - science/elmerpost

= use x86_64 as ARCH
  - devel/g-wrap

= other changes
  - print/magicfilter
    GNU_CONFIGURE -> HAS_CONFIGURE since it's not generated by autoconf

Total # of ports modified:  1,027
Total # of ports affected: ~7,000 (set GNU_CONFIGURE to yes)

PR:		126524 (obsoletes 52917)
Submitted by:	rafan
Tested on:	two pointyhat 7-amd64 exp runs (by pav)
Approved by:	portmgr (pav)

- Chase the gsl shared lib bump.

Approved by:	thierry (mentor)

Build fix. gfortran has intrinsic etime and we should use it.

Submitted by:	linimon

Add WANT_PERL to get the bsd.perl.mk inclusion.  This should have no effect with bsd.port.mk 1.586.

Now we use USE_FORTRAN=yes to use FORTRAN compiler.

chase math/gsl lib version

- Welcome X.org 7.2 \o/. - Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}. - Bump PORTREVISION for ports intalling files in ${X11BASE}.

- Remove old Perl support from unmaintained ports in categories starting   with letter o-z

* Migrate to gfortran. * Bump port revision. * Use gfortran compiled lapack.

Submitted by:	kris via pointyhat.

- Bump PORTREVISION and change lib version because math/gsl are updated. - portlint(1)

Update to 1.2.1.

Changelog at <http://geuz.org/getdp/doc/VERSIONS>.

Upgrade to 1.2.0.

Changelog at <http://geuz.org/getdp/doc/VERSIONS>.

Upgrade to 1.1.2.

- Add SHA256

Upgrade to 1.1.0.

Bump PORTREVISION after the libgsl update.

Obtained from:	thierry

Chase the libgsl update.

At Kris's request, back out the MACHINE_ARCH spelling correction until after 5.4-RELEASE.

Assist getting more ports working on AMD64 by obeying the Ports Collection documentation and use 'ARCH' rather than 'MACHINE_ARCH'.

Fix doc generation, broken since the upgrade to teTeX 3.0.

According to Hiroki Sato:

"In teTeX 3.0, pdfetex is used for a DVI output, so the texinfo.tex
 always detects the PDF output feature.  Although there are several means
 to fix this problem, I think disabling such detection should be simple
 and enough."

Reported by:	kris via pointyhat
Obtained from:	hrs