net/mpich 5.0.1

- clean the CONFLICTS line;

- no more ports in the tree depend on MPICH 2: mark it deprecated, and advise
  to switch to MPICH 3.

net/mpich2: Unbreak build with GCC 10

checking whether gfortran10 allows mismatched arguments... no
configure: error: The Fortran compiler gfortran10 will not compile files that call
the same routine with arguments of different types.

http://package18.nyi.freebsd.org/data/121amd64-default-PR244494/2020-06-10_18h04m44s/logs/errors/mpich2-1.5_14,5.log

PR:		246700

net/mpich: Unbreak build with GCC 10

checking whether gfortran10 allows mismatched arguments... no
configure: error: The Fortran compiler gfortran10 will not compile files that call
the same routine with arguments of different types.

http://package18.nyi.freebsd.org/data/121amd64-default-PR244494/2020-06-10_18h04m44s/logs/errors/mpich-3.2.1_6.log

PR:		246700

Remove the Python 2.7 modules, so that we can keep this port untill all consumers have switched to a newer MPI provider.

Mpich installs some Perl scripts, e.g. parkill. If Perl is not found during the build, their shebang is: #!

Clean up after java/openjdk6 and java/openjdk6-jre removal

java/openjdk6 support was removed from Mk/bsd.java.mk (r512662) and
java/openjdk6 and java/openjdk6-jre were removed from the ports tree
(r512663).  Now this patch completely removes remaining stuff from the
ports tree.

PR:			241953 (exp-run)
Reviewed by:		glewis
Approved by:		portmgr (antoine)
Differential Revision:	https://reviews.freebsd.org/D22342

Add USES=xorg USES=gl, ports categories n

Add USES=xorg and USES=gl to ports in categories starting with 'n'.
While here, try to sprinkle other USES (mostly gnome and sdl) as needed.

- Add compat for NOCCACHE -> NO_CCACHE

Convert to UCL & cleanup pkg-message (categories n)

(and missed 3 missed files from previous categories.)

Bump PORTREVISION for ports depending on the canonical version of GCC as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330

Related to revision 499061 bump ports with USES=fortran to have them benefit from the improved situation where libgcc_s is only used when absolutely necessary.

Suggested by:	tijl

Update MASTER_SITES and WWW

net/mpich: Remove the compiler version check

It fails on science/meep for no obvious reason, and would otherwise prevent meep from being upgraded mpich2->mpich.

Bump PORTREVISION for ports depending on the canonical version of GCC defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.

PR:		231590

Add USES=compiler:c11 to fix build on gcc-based archs.

PR:		233307
Submitted by:	Piotr Kubaj

Bump PORTREVISION for ports depending on the canonical version of GCC in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

net/mpich2: Unbreak build by setting BASH_SHELL environment variable

Without it it was failing for me with wrong bash interpreter path in all executables (ex. mpicxx).
Not sure why central builds weren't failing, but configrure expects BASH_SHELL to be set.

Also order USExx section.

Approved by:	portmgr

Update to 3.2.1 and drop maintainership.

Fix an incorrect plist when the option X11 is deselected.

PR:		228155
Submitted by:	doralitze (at) chaotikum.org

Bump PORTREVISIONs of all users of math/mpc that we just updated to version 1.1.0 (via revision 464079).

Remove a few text occurrences of NOPORTDOCS.

Sponsored by:	Absolight

- Those ports fail to build with python3 - Add some explicit FLAVOR to dependencies where needed

Cleanup after removal of libexecinfo from ports.

PR:		220271
Submitted by:	mat (review), Yasuhiro KIMURA (PR)
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D11488

Remove USES=execinfo.

PR:		220271
Submitted by:	mat (review), Yasuhiro KIMURA (PR)
Sponsored by:	Absolight
Differential Revision:	https://reviews.freebsd.org/D11488

Bump PORTREVISION for ports depending on the canonical version of GCC (via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
   c++14-lang, c++0x, c11, or gcc-c++11-lib.

PR:		219275

It is possible that r441426 will fix the build problem on armv6.  Give it a try.

Approved by:	portmgr (tier-2 blanket)

Mark some ports failing on various tier-2 archs.  In cases where the error message was a stub, provide a real one.

While here, pet portlint.

This is a catchup commit from various earlier commits.

Approved by:	portmgr (tier-2 blanket)

Bump PORTREVISIONs for ports depending on the canonical version of GCC and lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

Bump PORTREVISIONS for ports depending on the canonical version of GCC and lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some circumstances such as versions of FreeBSD or platforms), part II.

The first part covered  ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.

PR:		214965
Reported by:	thierry

Add patch to apply alignment attribute to a struct instead of a typedef. This rounds the size of the struct to a multiple of the alignment such that malloc and friends allocate memory with the correct alignment.

PR:		214784
MFH:		2016Q4

Bump PORTREVISIONS for ports depending on the canonical version of GCC and lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some circumstances such as versions of FreeBSD or platforms).

In particular that is ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.

Convert to @sample

Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.

With hat:	portmgr
Sponsored by:	Absolight

Remove MAKE_JOBS_UNSAFE: according to mpich2 wiki FAQ, this issue was fixed since v1.5a1.

PR:		ports/207691
Submitted by:	jiashiun (at) gmail.com

The configure variable MPICH_LDFLAGS is no longer supported.  There is a separate variable for each compiler wrapper now.

PR:		206655

USES=execinfo localbase switch.

PR:		ports/205388
Submitted by:	pawel

Update to MPICH 3.2

By default libtool replaces -export-symbols <file> with -retain-symbols-file <file> on ELF systems, but this doesn't really do what -export-symbols is meant to do.  On GNU ELF systems it converts <file> to a simple version script first and then uses -version-script instead of -retain-symbols-file. Let USES=libtool patch libtool scripts to do this on all systems with GNU ld(1).

Bump PORTREVISION on all ports where the build log contains -export-symbols.

audio/calf: This port builds a module that now exports only one function,
but it also builds a number of executables that link to this module and
expect to see other functions.  Because it's already a bit dodgy to link to
a module (libtool warns about this) let the module continue to export only
one function and instead build an ordinary library from the same source that
the executables can link to.  Fix a number of other issues in the same
Makefile.am and clean up the port Makefile.

japanese/scim-honoka: Tries to hide all symbols that start with an
underscore, but because this library is written in C++ all symbols start
with _Z so it ends up hiding everything.  Just don't hide anything at all
like the textproc/scim configure script does.

multimedia/schroedinger: Apply an upstream patch.

textproc/scim-input-pad: Same as japanese/scim-honoka.

PR:		201922
Approved by:	portmgr (antoine)
Exp-run by:	antoine

- Enable FORTRAN and GFORKER options by default due to popular request - Add option group descriptions

net category: Remove $PTHREAD_LIBS

openafs did not pass check-plist (pre-existing) so fixed and bumped.
Also, pkg-plist was sorted.  mediatomb and spread also fail plist-checks
but they weren't fixed.

approved by:	PTHREAD blanket

- Update to MPICH 3.1.4 - Pass *FLAGS variables to configure via MPICHLIB_*FLAGS because otherwise   they are hardcoded into mpicc [1]

PR:		197563 [1]

Remove explicit dependency on javavmwrapper for ports that USE_JAVA

Update to MPICH 3.1.3

From the announcement:
This release adds several enhancements to Portals4 support, PAMI, RMA, and
ROMIO.  It also contains a large number of bug fixes.

net/mpich2: Fix typo in MPI_CFLAGS (from previous commit)

net/mpich2: fix pkg-plist when JAVA option disabled, but while here...

When the default JAVA option is turned off, the check-plist fails due
to four files that don't get installed, so prefix them with %%JAVA%%

While here:
 * Fixing stage-qa with INSTALL_TARGET=install-strip
 * Manually strip JAVA option library libTraceInput.so as needed
 * Remove obsolete @dirrm
 * Add CFLAGS related to using ports execinfo to find the execinfo.h
   (ports GCC seem to look in /usr/local/include by default, but DF's
    base compiler does not, so explicitly specify this location)

All of these should be covered under the "Just Fix It" blanket

Update the default version of GCC in the Ports Collection from GCC 4.7.4 to GCC 4.8.3.

Part II, Bump PORTREVISIONs.

PR:		192025
Tested by:	antoine (-exp runs)
Approved by:	portmgr (implicit)

- Upgrade to 1.5;

- Bump PORTREVISION for consumers.

Upgrade to 1.4.1p1.

- Take maintainership back;

- Stagify and modernize.

Update to MPICH 3.1.2

From the announcement:
This release contains significant enhancements to the BG/Q device,
especially for RMA and shared memory functionality.  It also contains
enhancements to ROMIO and upgrades hwloc to 1.9.  In addition, it updates
its weak alias support to align with gcc-4.x, has a better implementation
of MPI_Allreduce for intercommunicator, adds more F08 test cases and fixes
several bugs present in 3.1.1.