net/mpich 5.0.1

Reset maintainer of net/mpich2

This port is unstaged.  There were PRs discussing it, but no staging
PR existed, so the maintainer should have been reset back in June.
Several staged ports that depend on this one are currently at risk of
being removed with it.  It's also very old (ver 1.3.2) and the current
release is at 3.1.2, so it also needs to be updated to the latest
version as well as staged.

Approved by:	portmgr (implicit, not staged)

Repair instances, almost all courtesy of bf ;-), of spaces and/or tabs before the =. This made doing regular expressions on the ports tree really difficult.

Approved by:	portmgr (not really, but touches unstaged ports)

- Switch devel/hwloc to USES=libtool, drop .la files - Bump dependent ports as .so version has changed - Add LICENSE_FILE - While here, fix stagedir reference in www/trafficserver

Approved by:	portmgr blanket

Modernize LIB_DEPENDS

With hat:	portmgr

Remove indefinite articles and trailing periods from COMMENT, plus minor COMMENT typos and surrounding whitespace fixes. A few Makefiles where not included as they contain Latin-1 characters that break the Phabricator workflow. Category N.

CR:		D307
Approved by:	portmgr (bapt)

Update to MPICH 3.1.1.

From the announcement:
This is a stable release that adds several capabilities including Blue
Gene/Q implementation supports for MPI-3, experimental Fortran 2008
bindings, significant rework of MPICH library management, and a large
number of bug fixes.

Convert all :U to :tu and :L to :tl

Since FreeBSD 8.4 and FreeBSD 9.1 make(1) do support :tu and :tl as a
replacement for :U and :L (which has been marked as deprecated)

bmake which is the default on FreeBSD 10+ only support by default
:tu/:tl a hack has been added at the time to support :U and :L to ease
migration. This hack is now not necessary anymore

Note that this makes the ports tree incompatible with make(1) from
FreeBSD 8.3 or earlier

With hat:	portmgr

When linking a library libA with a library libB using libtool, if libB.la exists, libtool will add all libraries libB.la refers to (dependency_libs field) to the linker command line and store them in the dependency_libs field of libA.la.  So everything that subsequently links with libA will also link to these extra libraries.  This causes too much overlinking.

This commit modifies Mk/Uses/libtool.mk so it empties the dependency_libs
field in .la libraries during staging.  However, because .la libraries have
very limited use when dependency_libs is empty it makes sense to completely
remove them during staging.

So with this commit USES=libtool is modified to remove .la libraries and a
new form (USES=libtool:keepla) is introduced in case they need to be kept
(dependency_libs is still emptied).

PORTREVISION is bumped on all ports with USES=libtool that install .la
libraries.  Most ports are also changed to add :keepla because .la
libraries have to be kept around as long as there are dependent ports with
.la libraries that refer to them in their dependency_libs field.  In most
cases :keepla can be removed again as soon as all dependent ports that
install .la libraries have some form of USES=libtool added to their
Makefile.

PR:		ports/188759
Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

Update the default version of GCC used in the Ports Collection from GCC 4.6.4 to GCC 4.7.3.  This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk.

Part II, Bump PORTREVISIONs.

PR:		182136
Supported by:	Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports)
Tested by:	bdrewery (two -exp runs)

- Update to MPICH 3.1. - Remove bash and perl dependencies. - Make Fortran support optional. - Add options to select process managers.

Based on suggestions made by Matthieu Volat <matthieu.volat@ujf-grenoble.fr>

Convert all USE_FORTRAN=yes to "USES=fortran, USE_GCC=yes".  In most cases USE_GCC=yes has been omitted though.

Remove USE_FORTRAN handling from bsd.port.mk and bsd.gcc.mk.

Minor cleanups in some ports like USE_GMAKE, NOPORTDOCS,...

Exp-run:	bdrewery
Approved by:	portmgr (bdrewery)

Introduce MPICH version 3.1rc3 in net/mpich (copied from net/mpich2) as upstream MPICH2 has been renamed back to MPICH.

net/mpich2: fix usage of python

Reported by:	exp-run (PR 184591)
Approved by:	portmgr (blanket)

Update to libmpc version 1.0.1 which brings the following fixes:

- Switched to automake 1.11.6, see CVE-2012-3386.
 - #14669: Fixed extraction of CC from gmp.h.
 - Fixed case of intermediate zero real or imaginary part in mpc_fma,
   found by hydra with GMP_CHECK_RANDOMIZE=1346362345.

This is on top of the following changes from version 1.0

 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no
   invariant sections) for the documentation.
 - 100% of all lines are covered by tests
 - Renamed functions
   . mpc_mul_2exp to mpc_mul_2ui
   . mpc_div_2exp to mpc_div_2ui
 - 0^0, which returned (NaN,NaN) previously, now returns (1,+0).
 - Removed compatibility with K&R compilers, which was untestable due
   to lack of such compilers.
 - New functions
   . mpc_log10
   . mpc_mul_2si, mpc_div_2si
 - Speed-ups
   . mpc_fma
 - Bug fixes
   . mpc_div and mpc_norm now return a value indicating the effective
     rounding direction, as the other functions.
   . mpc_mul, mpc_sqr and mpc_norm now return correct results even if
     there are over- or underflows during the computation.
   . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has
     infinite part and equals output variable is corrected.
   . mpc_fr_sub: Wrong return value for imaginary part is corrected.

Convert to the new LIB_DEPENDS standard and remove hard-coded
.so versions from a couple of dependent ports.

Bump PORTREVISIONS of all dependent ports.

PR:		183141
Approved by:	portmgr (bdrewery)

Add NO_STAGE all over the place in preparation for the staging support (cat: net)

Convert USE_GNOME=pkgconfig to USES=pkgconfig While here: - Trim headers - Convert:   * USE_GNOME=gnomehack -> USES=pathfix   * USE_PERL5 -> USES=perl5   * USE_GMAKE -> USES=gmake

Convert to new options framework While here trim parts related to unsupported FreeBSD versions

Decommissioning java 1.5 (EOLed since October 2009): suppress any reference to JAVA_VERSION=	1.5+ (part3)

fix the build after the change in the default Java ports; remove X11BASE; add OPTIONS; sort USE* and options-handling blocs; remove outdated Java conditionals and checks for unsupported versions of FreeBSD; remove unnecessary dependence on gmake; fix default FFLAGS; reposition LICENSE*

adopt

Release to the pool

- Mark BROKEN: does not package

Reported by:	pointyhat

- Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) - Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:		157936
Submitted by:	myself
Exp-runs by:	pav
Approved by:	pav

Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, remove support for them from bsd.java.mk.  As Jikes is not available in Java 1.5 or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports which used it (only occurences were USE_JIKES=no).  Support for the Blackdown VM is also removed, as it is not available in Java 1.5 and higher.

Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect
old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5.
While here, replace static values of JAVA_VERSION in files/*.in by
%%JAVA_VERSION%% .

PR:		ports/158969
Submitted by:	rene
Tested on:	pointyhat-west -exp

- Update maintainer address

Approved by: rene (mentor)

- Chris Rees <utisoft at gmail.com> takes the maintainership - Remove CONFLICTS with audio/musicpd

PR:		ports/156624
Submitted by:	Chris Rees <utisoft at gmail.com>

Upgrade to 1.3.2p1.

Changelog at
<http://www.mcs.anl.gov/research/projects/mpich2/about/index.php?s=news>

PR:		ports/154714

- Annotate CONFLICTS between audio/musicpd net/mpich2

PR:		ports/153194
Submitted by:	nivit
Approved by:	Chris Rees (maintainer of audio/musicpd)

Upgrade to 1.3. Changelog at <http://www.mcs.anl.gov/research/projects/mpich2/about/index.php?s=news>

PR:		ports/151867
Submitted by:	/me

Upgrade to 1.2.1p1.

Changelog available at:
http://trac.mcs.anl.gov/projects/mpich2/browser/mpich2/branches/release/mpich2-1.2.1/CHANGES

Fix previous commit if NOPORTDOCS is defined.

Reported by:	QAT

Removing a .bak file.

Reported by:	pointyhat via pav

- Upgrade to 1.2.1 	Changelog at 	<https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.2.1/CHANGES>

- Don't set PREFIX anymore to $PREFIX/mpich2.

- Mark MAKE_JOBS_UNSAFE

Reported by:	pointyhat

Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now implies lang/gcc44 up from lang/gcc43.

Approved by:	portmgr

Upgrade to 1.1.1p1.

Changelog at
<https://trac.mcs.anl.gov/projects/mpich2/browser/mpich2/branches/release/mpich2-1.1.1/CHANGES?rev=5141>

Mark BROKEN on 6-RELEASE.

Reported by:	pointyhat via Pav

Upgrade to 1.1.1.

Changelog at
<https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1.1/CHANGES>

Upgrade to 1.1.

Announcement at
<http://www.mcs.anl.gov/research/projects/mpich2/about/index.php?s=news>

Notified by:	Pavan Balaji <balaji (at) mcs.anl.gov>

- Update download location, update WWW

Fix LIB_DEPENDS.

- Bump PORTREVISION to chase the compiler change, in order to avoid the message:

/usr/local/mpich2/include/mpicxx.h:46:4: error: #error 'Please use the
same version of GCC for compiling MPICH2 and user MPI programs'

- use execinfo.

Remove net/mpich.  It fails to build, does not have a maintainer, no other port depends on it, and has been superseded by net/mpich2.

Discussed with:	pav

Remove duplicate flags in CONFIGURE_ENV.

Spotted by:	gerald

Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3.

Use ${FC} instead of hard coding gfortran42 (which would need to be gfortran43 nowadays).

Remove F77=${FC} from CONFIGURE_ENV since this provided by Mk/bsd.gcc.mk.

Add USE_GCC=4.3 since this port uses both C and Fortran frontends.

1 - add a missing USE_XORG;

2 - fix plist;

3 - release maintainership.

Reported by:	pointyhat via erwin (1) + QAT (2)

Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. Specifically, newer autoconf (> 2.13) has different semantic of the configure target. In short, one should use --build=CONFIGURE_TARGET instead of CONFIGURE_TARGET directly. Otherwise, you will get a warning and the old semantic may be removed in later autoconf releases.

To workaround this issue, many ports hack the CONFIGURE_TARGET variable
so that it contains the ``--build='' prefix.

To solve this issue, under the fact that some ports still have
configure script generated by the old autoconf, we use runtime detection
in the do-configure target so that the proper argument can be used.

Changes to Mk/*:
 - Add runtime detection magic in bsd.port.mk
 - Remove CONFIGURE_TARGET hack in various bsd.*.mk
 - USE_GNOME=gnometarget is now an no-op

Changes to individual ports, other than removing the CONFIGURE_TARGET hack:

= pkg-plist changed (due to the ugly CONFIGURE_TARGET prefix in * executables)
  - comms/gnuradio
  - science/abinit
  - science/elmer-fem
  - science/elmer-matc
  - science/elmer-meshgen2d
  - science/elmerfront
  - science/elmerpost

= use x86_64 as ARCH
  - devel/g-wrap

= other changes
  - print/magicfilter
    GNU_CONFIGURE -> HAS_CONFIGURE since it's not generated by autoconf

Total # of ports modified:  1,027
Total # of ports affected: ~7,000 (set GNU_CONFIGURE to yes)

PR:		126524 (obsoletes 52917)
Submitted by:	rafan
Tested on:	two pointyhat 7-amd64 exp runs (by pav)
Approved by:	portmgr (pav)

Fix version going backwards since the bump following USE_XLIB -> USE_XORG.

No functional change.

Reported by:	kris

Bump portrevision due to upgrade of devel/gettext.

The affected ports are the ones with gettext as a run-dependency
according to ports/INDEX-7 (5007 of them) and the ones with USE_GETTEXT
in Makefile (29 of them).

PR:             ports/124340
Submitted by:   edwin@
Approved by:    portmgr (pav)